GTN Materials Search

We are testing a new search experience. It does not do semantic ranking of results, but it's maybe a nicer and faster interface. In the future we might bring back the ranking of results. If you wish to access the old search interface, it will remain available here.

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Identifier	Type	Title	Topic	Level	Length
purlGTN:	News	Giessen joins the Galaxy Training Academy 2025 with on site support gtntrainingcontributing
purlGTN:N00111	News	Survey about a week-long Galaxy Admin Training in Europe gtntrainingadmin
purlGTN:N00110	News	Galaxy Training Academy 2025 - Register now 🎉 gtntrainingcontributing
purlGTN:N00109	News	Galaxy meets Onedata — distributed storage for science esg-wp4esgcontributing
purlGTN:N00108	News	An Ode to Helena - from the 🥓Bacon Brigade gtn
purlGTN:N00107	News	Bioinformatics Projects Pathway for Students: New insights from public data! gtnsingle-cell
purlGTN:N00105	News	SPOC HDR UK ELIXIR-UK CoFest 2025: How did it go? gtnsingle-cell
purlGTN:N00106	News	Call for Trainers and Helpers for the Galaxy Training Academy 2025 gtnteachingcontributing
purlGTN:N00104	News	BioNT basic curriculum Round Two - Starting in autumn 2024 with the RNA-Seq and Python Workshops gtnevent
purlGTN:N00101	News	GTN's Gift for 2024 gtnsingle-cellnew featurenew tutorialcontributingcommunity
purlGTN:N00100	News	🖖🏾Galaxy SPOC Community: Year in Review gtncommunicationssingle-cell
purlGTN:N00103	News	The GTN joined the BioNT Community Event & CarpentryConnect - Heidelberg 2024 gtnevent
purlGTN:N00099	News	Organizing GTA2025: Give us feedback and your availability! gtneventteachingcontributingcommunity
purlGTN:N00098	News	SPOC CoFest 2024: How did it go? gtnsingle-cell
purlGTN:N00097	News	Credit where it's due: GTN Reviewers in the spotlight gtn infrastructurenew featureautomationcontributingcommunity
purlGTN:N00096	News	New Tutorial: Tracking of mitochondria and capturing mitoflashes bioimagingmitoflashmitochondriaimaging
purlGTN:N00102	News	Massive open online education party: The Galaxy Training Academy gtn
purlGTN:N00095	News	Galaxy Administrator Time Burden and Technology Usage deployingmaintenancesurveyadmin
purlGTN:N00092	News	Simplifying GTN contribution with Google Forms gtn infrastructurenew featureautomationcontributing
purlGTN:N00094	News	New Tutorial: Single-cell ATAC-seq standard processing with SnapATAC2 new tutorialsingle-cellepigenetics
purlGTN:N00093	News	Registration Open for BioNT Community Event & CarpentryConnect Heidelberg
purlGTN:N00091	News	So many new features! GTN 2023-2024 Updates gccgtn infrastructurecontributing
purlGTN:N00090	News	4th Mycobacterium tuberculosis complex NGS made easy NGSTuberculosisDrug-resistancetransmissionevolutionone-healthmicrobiome
purlGTN:N00089	News	GTN Video Library 2.0: 107 hours of learning across 154 videos gtncontributingteachingcommunity
purlGTN:N00088	News	Phylogenetics tutorial takes researchers back to basics! PhylogeneticsTutorialGTNAustralian BioCommonsevolution
purlGTN:N00087	News	From GTN Intern to Tutorial Author to Bioinformatician single-celltrainingeducationtrajectoryusercontributorcontributing
purlGTN:N00086	News	Open Call for Trainers for the Galaxy Training Academy gtnteachingcontributing
purlGTN:N00085	News	New Galaxy training: Building an amplicon sequence variant (ASV) table from 16S data using DADA2 new tutorialmicrobiome
purlGTN:N00084	News	Celebrating the Milestone: 400 Tutorials on the Galaxy Training Network! gtncontributingcommunity
purlGTN:N00083	News	Integrating the Galaxy Training Network into the Tool Form gtnnew featurealready-on-hubcontributing
purlGTN:N00082	News	Standards compliant™ training news via RSS/Atom gtn infrastructurecontributing
purlGTN:N00081	News	All GTN training data are now automatically mirrored via Onedata esg-wp4esgcontributing
purlGTN:N00080	News	Introducing GTN Event Pages gtn infrastructurenew featureeventscontributingcommunity
purlGTN:N00079	News	Open Galaxy Position at Galaxy Europe Team, University of Freiburg jobsfreiburgeu
purlGTN:N00078	News	Perfectly FAIR Training! gtn infrastructurefaircontributing
purlGTN:N00077	News	Open Galaxy Positions at Melbourne Bioinformatics jobsaustralia
purlGTN:N00076	News	Learn to use MINERVA Platform's COVID-19 Disease Map with Galaxy by-covidpathwaysminervagtn infrastructurenew featureone-healthtranscriptomics
purlGTN:N00075	News	New Learning Pathway for FAIR Data Management developed by ELIXIR-UK Data Stewardship Fellows and Experts fairdmpdata stewardshipdata managementnew learning pathway
purlGTN:N00074	News	Cool URLs Don't Change, GTN URLs don't either. gtn infrastructurenew featurecontributing
purlGTN:N00073	News	Lost in a topic? Try a Learning Pathway! gtn infrastructurenew feature
purlGTN:N00072	News	GTN ❤️ GMOD new topicnew featuregenome-annotationGMOD
purlGTN:N00069	News	🪐📲 Hosting Galaxy at the Edge: Directly in Your Pocket! funsystem administratorsdevelopershumouradmin
purlGTN:N00071	News	GTN in Discourse contributingcommunity
purlGTN:N00068	News	Simplified GTN News submission via Google Form contributingcommunity
purlGTN:N00070	News	FAIR Data management in single cell analysis single-celldata managementdata importfair
purlGTN:N00067	News	Galaxy Single-cell Community: Year in Review gtncommunicationssingle-cell
purlGTN:N00066	News	GTN Helper Bots Connect the Galaxy gtncommunicationscontributing
purlGTN:N00065	News	User story: Where Galaxy meets medicinal chemistry computational-chemistryuser storygtn
purlGTN:N00064	News	Tutorial Feature: Easier launching of WorkflowHub & Dockstore Workflows feature updategtntutorialscontributing
purlGTN:N00063	News	Feedback: Easy slide recordings feedbacktestimonialgtncontributing
purlGTN:N00062	News	GTN has left Twitter/X as of October gtncommunicationscontributing
purlGTN:N00061	News	Update: Workflow List now searches WorkflowHub.eu, advanced query syntax feature updategtncontributing
purlGTN:N00060	News	Single cell subdomain re-launch: Unified and feedback-driven gtnsingle-cell
purlGTN:N00059	News	New Feature: Embeddable GTN Tutorial Lists and UseGalaxy Workflow List Widgets new featuregtncontrributingcommunity
purlGTN:N00058	News	New Feature: GTN User Preferences new featuregtncontributing
purlGTN:N00057	News	AI4Life teams up with GTN to enhance training resources new topicnew communityimaging
purlGTN:N00056	News	ELIXIR-UK Fellow Launches New FAIR Data Management Training new topicnew tutorialfair
purlGTN:N00055	News	New Feature: Pan-Galactic Tool Search new featuregtncontributing
purlGTN:N00054	News	GTN Celebrates Pride Month: Alan Hart & M. Tuberculosis contributing
purlGTN:N00053	News	New Galaxy training: Genome-wide alternative splicing analysis new tutorialtranscriptomics
purlGTN:N00052	News	BY-COVID and RO-Crate collaboration brings new topic: FAIR Data, Workflows & More new topicnew featurefair
purlGTN:N00051	News	New Feature: my.galaxy.training new featuregtncontributing
purlGTN:N00050	News	New Feature: Persistent URLs (PURLs) / Shortlinks new featuregtncontributing
purlGTN:N00049	News	New Feature: GTN Rdoc new featuregtncontributing
purlGTN:N00048	News	New Feature: Click-to-run Workflows new featuregtncontributing
purlGTN:N00047	News	New Feature: Learning Pathways! new featurecontributing
purlGTN:N00046	News	New Feature: Trainer Directory! (Add yourself today!) new featurecommunity buildingcapacity buildingcontributing
purlGTN:N00045	News	What are the most used tools in the GTN? new featuregtncontributingcommunity
purlGTN:N00044	News	GTN Celebrates Black History Month contributing
purlGTN:N00043	News	New Tutorial: Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition new tutorialmicrobiome
purlGTN:N00042	News	New Feature: Prometheus Metrics endpoint new featuregtncontributing
purlGTN:N00041	News	New GTN Feature Tag-based Topics enables new SARS-CoV-2 topic new topicnew featureone-health
purlGTN:N00040	News	New GTN paper: "Galaxy Training: A powerful framework for teaching!" papercontributing
purlGTN:N00039	News	New Tutorial Suite: Deconvolution with MuSiC, from public data to disease interrogation! new tutorialsingle-celltranscriptomics
purlGTN:N00038	News	New Topic: Single Cell Analysis! new topicsingle-cellnew feature
purlGTN:N00037	News	New Tutorial: Data Manipulation new tutorialintroduction
purlGTN:N00036	News	New Tutorial: Workflow Reports new tutorialGalaxy Tips & Tricksgalaxy-interface
purlGTN:N00035	News	GTN Metadata Schemas new featurecontributing
purlGTN:N00034	News	New Tutorial Feature: Choose Your Own Tutorial gtn infrastructurenew featuretutorial authorscontributing
purlGTN:N00033	News	New Tutorial: VGP assembly pipeline new tutorialassemblypacbiovgp
purlGTN:N00032	News	New Feature: Automatic RMarkdown gtn infrastructurenew featurecontributing
purlGTN:N00031	News	GTN Smörgåsbord 2: Tapas Edition eventcontributingteaching
purlGTN:N00030	News	Support for annotating Funding Agencies new-featurecontributing
purlGTN:N00029	News	New Tutorials: PacBio data QC and Genome Assembly, and Genome Annotation with Funannotate new tutorialassemblygenome-annotation
purlGTN:N00028	News	New FAQs: How does the GTN stay FAIR and Collaborative faqfaircontributing
purlGTN:N00027	News	New Feature: GTN Video Library gtn infrastructurenew featurecontributing
purlGTN:N00026	News	New Feature: GTN API with OpenAPI 3 specification gtn infrastructurenew featurecontributing
purlGTN:N00025	News	Attention Contributors: GTN Performance Enhancements authorsdevelopersperformancecontributing
purlGTN:N00024	News	New Topic: Data Science Survival Kit gtn infrastructurenew topicdata-science
purlGTN:N00023	News	Got a minute? Take our survey about Galaxy for training and have your say! feedbackcontributing
purlGTN:N00022	News	New Feature: Automatic Jupyter Notebooks gtn infrastructurenew featurecontributing
purlGTN:N00021	News	New Feature: a feedback page to aggregate and display feedback answers new featurecontributing
purlGTN:N00020	News	Accessibility Improvements new featurecontributing
purlGTN:N00019	News	New Tutorial: Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data new tutorialvariant-analysiscovid-19one-health
purlGTN:N00018	News	New Tutorial: Visualization of RNA-Seq results with Volcano Plot in R new tutorialvisualisationtranscriptomics
purlGTN:N00017	News	New Tutorial: GitPod for contributing to the GTN new tutorialcontributing
purlGTN:N00016	News	New Tutorial: Genome Annotation with Apollo new tutorialgenome-annotation
purlGTN:N00015	News	Oh no, it changed! Quick, to the archive menu. new featurecontributing
purlGTN:N00014	News	Contributing to BioBlend as a developer new tutorialdev
purlGTN:N00013	News	New Feature: Easy Abbreviation new featurecontributing
purlGTN:N00012	News	¿Hablas español?: The first curated tutorial in Spanish! new tutorialespañolintroduction
purlGTN:N00011	News	New Tutorials: Whole transcriptome analysis of Arabidopsis thaliana new tutorialtranscriptomicsplantsmirna
purlGTN:N00010	News	New Feature: Video Player gtn infrastructurevideonew featurecontributing
purlGTN:N00009	News	New Tutorial: Downstream Single-cell RNA Plant analysis with ScanPy new tutorialsingle-cellplant
purlGTN:N00008	News	New Tutorials: Genome assembly of a MRSA genome new tutorialassemblymrsaamrnanoporeillumina
purlGTN:N00007	News	New Feature: FAQs gtn infrastructurecontributorsinstructorsnew featurecontributing
purlGTN:N00006	News	New Tutorial: Object tracking using CellProfiler new tutorialimaging
purlGTN:N00005	News	Next GTN CoFest May 20, 2021 cofestcontributing
purlGTN:N00004	News	Galaxy Community Conference 2021 event
purlGTN:N00003	News	Report on the GTN Smörgåsbord event eventpandemicremote-teachingteaching
purlGTN:N00002	News	Galaxy 21.01 released! galaxy
purlGTN:N00001	News	New Feature: Automatic Slides-to-video conversion new featurevideosgtnpandemicremote-teachingcontributing
purlGTN:N00000	News	Galaxy Admin Training Success admingateventpandemicremote-teaching
purlGTN:F00428	FAQs	Can this tutorial be adapted to other instructional development platforms?	Contributing to the Galaxy Training Material
purlGTN:F00429	FAQs	Can the FAIR-by-Design Methodology be used for FAIR development of other types of resources?	Contributing to the Galaxy Training Material
purlGTN:F00430	FAQs	Is there a certification available for the FAIR-by-Design Methodology?	Contributing to the Galaxy Training Material
purlGTN:F00282	FAQs	Do I need to create collections to run MaxQuant analysis or can I use single sample inputs?	Proteomics
purlGTN:F00283	FAQs	Including custom modifications into MaxQuant in Galaxy?	Proteomics
purlGTN:F00284	FAQs	Which isobaric labeled quantification methods does MaxQuant in Galaxy support?	Proteomics
purlGTN:F00137	FAQs	How does the GTN ensure accessibility?	GTN FAQ
purlGTN:F00002	FAQs	How do I create an account on a public Galaxy instance?	Galaxy FAQ
purlGTN:F00253	FAQs	It says I already have an account when registering for ecology.usegalaxy.eu	Ecology
purlGTN:F00003	FAQs	Can I create multiple Galaxy accounts?	Galaxy FAQ
purlGTN:F00004	FAQs	How can I reduce quota usage while still retaining prior work (data, tools, methods)?	Galaxy FAQ
purlGTN:F00005	FAQs	How to update account preferences?	Galaxy FAQ
purlGTN:F00392	FAQs	How to enable the Activity Bar	Galaxy FAQ
purlGTN:F00254	FAQs	Automatically trim adapters (without providing custom sequences)	Epigenetics
purlGTN:F00376	FAQs	How can I adapt this tutorial to my own data?	Microbiome
purlGTN:F00379	FAQs	How can I adapt this tutorial to my own data?	Microbiome
purlGTN:F00437	FAQs	Add Toolshed category to a tool	Galaxy FAQ
purlGTN:F00184	FAQs	Operating system compatibility	Galaxy Server administration
purlGTN:F00280	FAQs	What advantages does a Chromatogram Library have over a DDA-generated library or predicted spectral library?	Proteomics
purlGTN:F00320	FAQs	Why is Alevin is not working?	Single Cell
purlGTN:F00321	FAQs	Why is Alevin is not working?	Single Cell
purlGTN:F00306	FAQs	Is it possible to replace the existing alignment tools such as HISAT and Freebayes with other tools?	Proteomics
purlGTN:F00234	FAQs	Is it possible to use alternative tools to those proposed in the tutorial?	Assembly
purlGTN:F00225	FAQs	Why is amplification more of an issue in scRNA-seq than RNA-seq?	Single Cell
purlGTN:F00006	FAQs	Adding a custom database/build (dbkey)	Galaxy FAQ
purlGTN:F00174	FAQs	Pick the right Concatenate tool	Galaxy FAQ
purlGTN:F00007	FAQs	Beware of Cuts	Galaxy FAQ
purlGTN:F00008	FAQs	Extended Help for Differential Expression Analysis Tools	Galaxy FAQ
purlGTN:F00362	FAQs	How can I do analysis X? - Getting help	Galaxy FAQ
purlGTN:F00009	FAQs	Will my jobs keep running?	Galaxy FAQ
purlGTN:F00010	FAQs	My jobs aren't running!	Galaxy FAQ
purlGTN:F00011	FAQs	Regular Expressions 101	Galaxy FAQ
purlGTN:F00012	FAQs	Reporting usage problems, security issues, and bugs	Galaxy FAQ
purlGTN:F00013	FAQs	Results may vary	Galaxy FAQ
purlGTN:F00014	FAQs	Troubleshooting errors	Galaxy FAQ
purlGTN:F00015	FAQs	What information should I include when reporting a problem?	Galaxy FAQ
purlGTN:F00216	FAQs	I can’t find the “Analyze Data” button	Introduction to Galaxy Analyses
purlGTN:F00325	FAQs	AnnData Import/ AnnData Manipulate not working?	Single Cell
purlGTN:F00185	FAQs	Variable connection	Galaxy Server administration
purlGTN:F00186	FAQs	Define once, reference many times	Galaxy Server administration
purlGTN:F00187	FAQs	What if you forget `--diff`?	Galaxy Server administration
purlGTN:F00188	FAQs	Error: "skipping: no hosts matched"	Galaxy Server administration
purlGTN:F00189	FAQs	Running Ansible on your remote machine	Galaxy Server administration
purlGTN:F00190	FAQs	What is the difference between the roles with `role:` prefix and without?	Galaxy Server administration
purlGTN:F00191	FAQs	How do I know what I can do with a role? What variables are available?	Galaxy Server administration
purlGTN:F00192	FAQs	How do I see what variables are set for a host?	Galaxy Server administration
purlGTN:F00193	FAQs	Is YAML sensitive to True/true/False/false	Galaxy Server administration
purlGTN:F00236	FAQs	Why does my assembly graph in Bandage look different to the one pictured in the tutorial?	Assembly
purlGTN:F00243	FAQs	The folder `recipes/belerophon/` and the file `meta.yaml` already exist in bioconda?	Development in Galaxy
purlGTN:F00255	FAQs	In bowtie 2 parameters, in place of 1000 for other experiments, should we mention the median fragment length observed in our library?	Epigenetics
purlGTN:F00285	FAQs	What is the advantage of breaking down protein to peptides before mass spec?	Proteomics
purlGTN:F00277	FAQs	The Build tissue-specific expression dataset tool (step one) exits with an error code.	Proteomics
purlGTN:F00194	FAQs	Opening a split screen in byobu	Galaxy Server administration
purlGTN:F00427	FAQs	Can I use a public Galaxy for my private data?	Galaxy FAQ
purlGTN:F00307	FAQs	Why do we change the chromosome names in the Ensembl GTF to match the UCSC genome reference?	Proteomics
purlGTN:F00259	FAQs	Do you have resources to help me get started working in the cloud?	Using Galaxy and Managing your Data
purlGTN:F00438	FAQs	How do I add my community to the Galaxy CoDex?	Galaxy Community Building
purlGTN:F00138	FAQs	How does the GTN implement the "Ten simple rules for collaborative lesson development"	GTN FAQ
purlGTN:F00016	FAQs	Adding a tag to a collection	Galaxy FAQ
purlGTN:F00017	FAQs	Creating a dataset collection	Galaxy FAQ
purlGTN:F00018	FAQs	Creating a paired collection	Galaxy FAQ
purlGTN:F00182	FAQs	Changing the datatype of a collection	Galaxy FAQ
purlGTN:F00183	FAQs	Converting the datatype of a collection	Galaxy FAQ
purlGTN:F00019	FAQs	Renaming a collection	Galaxy FAQ
purlGTN:F00245	FAQs	I want to use a collection for outputs but it always passes the test even when the script fails. Why?	Development in Galaxy
purlGTN:F00447	FAQs	How can I add my SIG meetings to the Galaxy Community Activities calendar?	Galaxy Community Building
purlGTN:F00448	FAQs	How do I find the Community Home pages?	Galaxy Community Building
purlGTN:F00296	FAQs	How does one compare metaproteomics measurements from two experimental conditions?	Proteomics
purlGTN:F00382	FAQs	After sequencing with MinKNOW software, we get many fastq files, do these files need to be combined into one file before uploading or is it possible to upload them all at once?	Microbiome
purlGTN:F00286	FAQs	Do we need a contaminant FASTA for MQ in galaxy?	Proteomics
purlGTN:F00214	FAQs	How to Contribute to Galaxy	Development in Galaxy
purlGTN:F00212	FAQs	Contributing a Jupyter Notebook to the GTN	Contributing to the Galaxy Training Material
purlGTN:F00139	FAQs	Thanks!	GTN FAQ
purlGTN:F00140	FAQs	How can I get started with contributing?	GTN FAQ
purlGTN:F00141	FAQs	How can I contribute in "advanced" mode?	GTN FAQ
purlGTN:F00143	FAQs	How can I give feedback?	GTN FAQ
purlGTN:F00144	FAQs	What can I do to help the project?	GTN FAQ
purlGTN:F00145	FAQs	How can I report mistakes or errors?	GTN FAQ
purlGTN:F00146	FAQs	How can I test an Interactive Tour?	GTN FAQ
purlGTN:F00147	FAQs	How can I create new content without dealing with git?	GTN FAQ
purlGTN:F00297	FAQs	How does one convert RAW files to MGF peak lists within Galaxy?	Proteomics
purlGTN:F00298	FAQs	I have FASTQ files from metagenomics or metatranscriptomics datasets? How can I convert them into a protein FASTA file for metaproteomics searches?	Proteomics
purlGTN:F00233	FAQs	Customising the welcome page	Galaxy Server administration
purlGTN:F00391	FAQs	Using data source tools with Pulsar	Galaxy Server administration
purlGTN:F00195	FAQs	Database Issues	Galaxy Server administration
purlGTN:F00020	FAQs	Incomplete Dataset Download	Galaxy FAQ
purlGTN:F00021	FAQs	How to find and correct tool errors related to Metadata?	Galaxy FAQ
purlGTN:F00365	FAQs	Upload fasta datasets via links	Assembly
purlGTN:F00366	FAQs	Upload fastqsanger datasets via links	Assembly
purlGTN:F00023	FAQs	Finding BAM dataset identifiers	Galaxy FAQ
purlGTN:F00024	FAQs	Directly obtaining UCSC sourced genome identifiers	Galaxy FAQ
purlGTN:F00025	FAQs	Adding a tag	Galaxy FAQ
purlGTN:F00128	FAQs	Cambiar el tipo de datos	Galaxy FAQ
purlGTN:F00026	FAQs	Changing the datatype	Galaxy FAQ
purlGTN:F00177	FAQs	Changer le type de données	Galaxy FAQ
purlGTN:F00027	FAQs	Changing database/build (dbkey)	Galaxy FAQ
purlGTN:F00028	FAQs	Mismatched Chromosome identifiers and how to avoid them	Galaxy FAQ
purlGTN:F00029	FAQs	Converting the file format	Galaxy FAQ
purlGTN:F00030	FAQs	Creating a new file	Galaxy FAQ
purlGTN:F00031	FAQs	How to set Data Privacy Features?	Galaxy FAQ
purlGTN:F00403	FAQs	How to delete datasets?	Galaxy FAQ
purlGTN:F00032	FAQs	Detecting the datatype (file format)	Galaxy FAQ
purlGTN:F00033	FAQs	Downloading datasets	Galaxy FAQ
purlGTN:F00034	FAQs	Downloading datasets using command line	Galaxy FAQ
purlGTN:F00035	FAQs	Finding Datasets	Galaxy FAQ
purlGTN:F00036	FAQs	How to hide datasets?	Galaxy FAQ
purlGTN:F00037	FAQs	Different dataset icons and their usage	Galaxy FAQ
purlGTN:F00038	FAQs	Importing data from a data library	Galaxy FAQ
purlGTN:F00039	FAQs	Importing data from remote files	Galaxy FAQ
purlGTN:F00129	FAQs	Importación por medio de enlaces	Galaxy FAQ
purlGTN:F00040	FAQs	Importing via links	Galaxy FAQ
purlGTN:F00178	FAQs	Importer via un lien	Galaxy FAQ
purlGTN:F00041	FAQs	Understanding job statuses	Galaxy FAQ
purlGTN:F00042	FAQs	Moving datasets between Galaxy servers	Galaxy FAQ
purlGTN:F00404	FAQs	Manipulating multiple history datasets	Galaxy FAQ
purlGTN:F00043	FAQs	Datasets not downloading at all	Galaxy FAQ
purlGTN:F00044	FAQs	Purging datasets	Galaxy FAQ
purlGTN:F00045	FAQs	Quotas for datasets and histories	Galaxy FAQ
purlGTN:F00046	FAQs	Renaming a dataset	Galaxy FAQ
purlGTN:F00405	FAQs	How to un-delete datasets?	Galaxy FAQ
purlGTN:F00406	FAQs	How to un-hide datasets?	Galaxy FAQ
purlGTN:F00047	FAQs	Upload few files (1-10)	Galaxy FAQ
purlGTN:F00363	FAQs	Upload datasets from GenomeArk	Galaxy FAQ
purlGTN:F00048	FAQs	Upload many files (>10) via FTP	Galaxy FAQ
purlGTN:F00049	FAQs	Working with deleted datasets	Galaxy FAQ
purlGTN:F00050	FAQs	Working with very large fasta datasets	Galaxy FAQ
purlGTN:F00051	FAQs	Working with very large fastq datasets	Galaxy FAQ
purlGTN:F00052	FAQs	Working with GFF GFT GTF2 GFF3 reference annotation	Galaxy FAQ
purlGTN:F00053	FAQs	Using compressed fastq data as tool inputs	Galaxy FAQ
purlGTN:F00054	FAQs	Best practices for loading fastq data into Galaxy	Galaxy FAQ
purlGTN:F00055	FAQs	How do `fastq.gz` datasets relate to the `.fastqsanger` datatype metadata assignment?	Galaxy FAQ
purlGTN:F00056	FAQs	Compressed FASTQ files, (`*.gz`)	Galaxy FAQ
purlGTN:F00057	FAQs	How to format fastq data for tools that require .fastqsanger format?	Galaxy FAQ
purlGTN:F00058	FAQs	FASTQ files: `fastq` vs `fastqsanger` vs ..	Galaxy FAQ
purlGTN:F00059	FAQs	Identifying and formatting Tabular Datasets	Galaxy FAQ
purlGTN:F00060	FAQs	Understanding Datatypes	Galaxy FAQ
purlGTN:F00061	FAQs	How can I upload data using EBI-SRA?	Galaxy FAQ
purlGTN:F00062	FAQs	Data retrieval with “NCBI SRA Tools” (fastq-dump)	Galaxy FAQ
purlGTN:F00063	FAQs	NCBI SRA sourced fastq data	Galaxy FAQ
purlGTN:F00333	FAQs	The tutorial uses the normalised count table for visualisation. What about using VST normalised counts or rlog normalised counts?	Transcriptomics
purlGTN:F00299	FAQs	What software tools are available to determine taxonomic composition from mass spectrometry data?	Proteomics
purlGTN:F00331	FAQs	Could I use a different p-adj value for filtering differentially expressed genes?	Transcriptomics
purlGTN:F00329	FAQs	I get a different number of transcripts with a significant change in gene expression between the G1E and megakaryocyte cellular states. Why?	Transcriptomics
purlGTN:F00196	FAQs	How to read a Diff	Galaxy Server administration
purlGTN:F00226	FAQs	Why do we do dimension reduction and then clustering? Why not just cluster on the actual data?	Single Cell
purlGTN:F00278	FAQs	What is the principle of an enrichment analysis?	Proteomics
purlGTN:F00246	FAQs	My Rscript tool generates a strange R error on STDOUT about an invalid operation on a closure called 'args' ?	Development in Galaxy
purlGTN:F00247	FAQs	`docker-compose up` fails with error `/usr/bin/start.sh: line 133: /galaxy/.venv/bin/uwsgi: No such file or directory`	Development in Galaxy
purlGTN:F00260	FAQs	Where can I find example queries for use in the cloud and elsewhere?	Using Galaxy and Managing your Data
purlGTN:F00148	FAQs	How does the GTN ensure our training materials are FAIR?	GTN FAQ
purlGTN:F00224	FAQs	FASTQ format	Sequence analysis
purlGTN:F00372	FAQs	Why do we use FASTQ interlacer and not the FASTQ joiner?	Microbiome
purlGTN:F00130	FAQs	Uso del cuaderno de apuntes para ver varios conjuntos de datos	Galaxy FAQ
purlGTN:F00064	FAQs	Using the Window Manager to view multiple datasets	Galaxy FAQ
purlGTN:F00217	FAQs	UCSC - I fetched data from a remote website but now I’m logged out of Galaxy and my data is gone?	Introduction to Galaxy Analyses
purlGTN:F00322	FAQs	My Scanpy FindMarkers step is giving me an empty table	Single Cell
purlGTN:F00215	FAQs	Flatten a list of list of paired datasets into a list of paired datasets	Using Galaxy and Managing your Data
purlGTN:F00248	FAQs	What file/data formats are defined for I/O in Galaxy?	Development in Galaxy
purlGTN:F00300	FAQs	Why do we do dimension reduction and then clustering? Why not just cluster on the actual data?	Proteomics
purlGTN:F00317	FAQs	Where can I read more about Quality Control of data?	Sequence analysis
purlGTN:F00197	FAQs	Blank page or no CSS/JavaScript	Galaxy Server administration
purlGTN:F00198	FAQs	How many mules?	Galaxy Server administration
purlGTN:F00434	FAQs	How can I get my container requiring jobs to run in a container?	Galaxy Server administration
purlGTN:F00199	FAQs	Debugging tool errors	Galaxy Server administration
purlGTN:F00200	FAQs	Debugging tool memory errors	Galaxy Server administration
purlGTN:F00201	FAQs	Tool missing from Galaxy	Galaxy Server administration
purlGTN:F00202	FAQs	Galaxy UI is slow	Galaxy Server administration
purlGTN:F00357	FAQs	Updating from 22.01 to 23.0 with Ansible	Galaxy Server administration
purlGTN:F00218	FAQs	My Galaxy looks different than in the tutorial/video	Introduction to Galaxy Analyses
purlGTN:F00149	FAQs	Are there any upcoming events focused on Galaxy Training?	GTN FAQ
purlGTN:F00180	FAQs	Compatible Versions of Galaxy	GTN FAQ
purlGTN:F00150	FAQs	Ways to use Galaxy	GTN FAQ
purlGTN:F00151	FAQs	What is Galaxy?	GTN FAQ
purlGTN:F00279	FAQs	What is Gene Ontology (GO)?	Proteomics
purlGTN:F00227	FAQs	What exactly is a ‘Gene profile’?	Single Cell
purlGTN:F00152	FAQs	How can I load data?	GTN FAQ
purlGTN:F00244	FAQs	Where can I get planemo?	Development in Galaxy
purlGTN:F00203	FAQs	Using Git With Ansible Vaults	Galaxy Server administration
purlGTN:F00204	FAQs	Time to git commit	Galaxy Server administration
purlGTN:F00205	FAQs	Galaxy Admin Training Path	Galaxy Server administration
purlGTN:F00439	FAQs	Forking the GTN repository	Contributing to the Galaxy Training Material
purlGTN:F00440	FAQs	Updating the default branch from master to main	Contributing to the Galaxy Training Material
purlGTN:F00441	FAQs	Syncing your Fork of the GTN	Contributing to the Galaxy Training Material
purlGTN:F00417	FAQs	What's the Galaxy Community Board?	Galaxy Community Building
purlGTN:F00418	FAQs	How do I join the Galaxy Community Board?	Galaxy Community Building
purlGTN:F00419	FAQs	What is the Galaxy Governance Structure?	Galaxy Community Building
purlGTN:F00442	FAQs	GTN ADR: Image Storage	Contributing to the Galaxy Training Material
purlGTN:F00443	FAQs	GTN ADR: Why Jekyll and not another Static Site Generator (SSG)	Contributing to the Galaxy Training Material
purlGTN:F00444	FAQs	GTN Architectural Decision Record Template	Contributing to the Galaxy Training Material
purlGTN:F00445	FAQs	What is an Architectural Decision Record (ADR)?	Contributing to the Galaxy Training Material
purlGTN:F00422	FAQs	Using tutorial mode and the Case Study suite	Single Cell
purlGTN:F00446	FAQs	Slow incremental builds	Contributing to the Galaxy Training Material
purlGTN:F00153	FAQs	What is this website?	GTN FAQ
purlGTN:F00154	FAQs	How can I advertise the training materials on my posters?	GTN FAQ
purlGTN:F00155	FAQs	What audiences are the tutorials for?	GTN FAQ
purlGTN:F00156	FAQs	How can I cite the GTN?	GTN FAQ
purlGTN:F00399	FAQs	Creating a GTN Event	GTN FAQ
purlGTN:F00398	FAQs	Using Answer Key Histories	GTN FAQ
purlGTN:F00402	FAQs	Creating a GTN FAQ	GTN FAQ
purlGTN:F00157	FAQs	How is the content licensed?	GTN FAQ
purlGTN:F00352	FAQs	What licenses are used in the GTN?	GTN FAQ
purlGTN:F00452	FAQs	Making a minor correction to any training material	GTN FAQ
purlGTN:F00158	FAQs	Creating a GTN News post	GTN FAQ
purlGTN:F00159	FAQs	GTN Stats	GTN FAQ
purlGTN:F00160	FAQs	Sustainability of the training-material and metadata	GTN FAQ
purlGTN:F00436	FAQs	Supporting Tutorial Mode (GTN-in-Galaxy) in a tutorial	GTN FAQ
purlGTN:F00161	FAQs	What are the tutorials for?	GTN FAQ
purlGTN:F00162	FAQs	Adding workflow tests with Planemo	GTN FAQ
purlGTN:F00256	FAQs	Changing the heatmap colours	Epigenetics
purlGTN:F00407	FAQs	History annotation	Galaxy FAQ
purlGTN:F00451	FAQs	Archive a history	Galaxy FAQ
purlGTN:F00065	FAQs	Copy a dataset between histories	Galaxy FAQ
purlGTN:F00131	FAQs	Para la creación de un historial nuevo	Galaxy FAQ
purlGTN:F00066	FAQs	Creating a new history	Galaxy FAQ
purlGTN:F00179	FAQs	Créer un nouvel history	Galaxy FAQ
purlGTN:F00408	FAQs	Dataset colors	Galaxy FAQ
purlGTN:F00409	FAQs	Dataset snippet	Galaxy FAQ
purlGTN:F00410	FAQs	Datasets versus collections	Galaxy FAQ
purlGTN:F00067	FAQs	Downloading histories	Galaxy FAQ
purlGTN:F00068	FAQs	Find all Histories and purge (aka permanently delete)	Galaxy FAQ
purlGTN:F00069	FAQs	Finding Histories	Galaxy FAQ
purlGTN:F00070	FAQs	Importing a history	Galaxy FAQ
purlGTN:F00393	FAQs	View a list of all histories	Galaxy FAQ
purlGTN:F00411	FAQs	History options	Galaxy FAQ
purlGTN:F00132	FAQs	Cambiando el nombre de un historial	Galaxy FAQ
purlGTN:F00071	FAQs	Renaming a history	Galaxy FAQ
purlGTN:F00072	FAQs	Searching your history	Galaxy FAQ
purlGTN:F00073	FAQs	Finding and working with "Histories shared with me"	Galaxy FAQ
purlGTN:F00133	FAQs	Compartiendo un historial	Galaxy FAQ
purlGTN:F00074	FAQs	Sharing your History	Galaxy FAQ
purlGTN:F00394	FAQs	View histories side-by-side	Galaxy FAQ
purlGTN:F00412	FAQs	Switching to an existing history	Galaxy FAQ
purlGTN:F00413	FAQs	History tagging	Galaxy FAQ
purlGTN:F00414	FAQs	Top level history controls	Galaxy FAQ
purlGTN:F00075	FAQs	Transfer entire histories from one Galaxy server to another	Galaxy FAQ
purlGTN:F00076	FAQs	Undeleting history	Galaxy FAQ
purlGTN:F00077	FAQs	Unsharing unwanted histories	Galaxy FAQ
purlGTN:F00383	FAQs	What does `^.Gallus\|Homo\|Bos.$` mean?	Microbiome
purlGTN:F00384	FAQs	For preprocessing part with host removal: Where do you find the abbreviations for each host species available (e.g. bos is cow, homo is human..)?	Microbiome
purlGTN:F00211	FAQs	Most tools seem to have options for assembly using long and short reads, what are the pros and cons of the different tools?	Assembly
purlGTN:F00239	FAQs	Which icons are available to use in my tutorial?	Contributing to the Galaxy Training Material
purlGTN:F00431	FAQs	Importing data from Sierra LIMS	Galaxy FAQ
purlGTN:F00385	FAQs	From where can I import other genomes?	Microbiome
purlGTN:F00334	FAQs	When is the "infer experiment" tool used in practice?	Transcriptomics
purlGTN:F00424	FAQs	Input Histories & Answer Keys	Contributing to the Galaxy Training Material
purlGTN:F00377	FAQs	The input for a tool is not listed in the dropdown	Microbiome
purlGTN:F00380	FAQs	The input for a tool is not listed in the dropdown	Microbiome
purlGTN:F00206	FAQs	Install tools via the Admin UI	Galaxy Server administration
purlGTN:F00164	FAQs	What are the best practices for teaching with Galaxy?	GTN FAQ
purlGTN:F00165	FAQs	What Galaxy instance should I use for my training?	GTN FAQ
purlGTN:F00166	FAQs	How do I get help?	GTN FAQ
purlGTN:F00167	FAQs	Where do I start?	GTN FAQ
purlGTN:F00079	FAQs	Launch JupyterLab	Galaxy FAQ
purlGTN:F00080	FAQs	Open a Terminal in Jupyter	Galaxy FAQ
purlGTN:F00081	FAQs	Open interactive tool	Galaxy FAQ
purlGTN:F00082	FAQs	Knitting RMarkdown documents in RStudio	Galaxy FAQ
purlGTN:F00083	FAQs	Launch RStudio	Galaxy FAQ
purlGTN:F00084	FAQs	Learning with RMarkdown in RStudio	Galaxy FAQ
purlGTN:F00085	FAQs	Stop RStudio	Galaxy FAQ
TBA	Slides	Introduction to Synthetic Biology	Synthetic Biology
TBA	Slides	Galaxy from a developer point of view	Development in Galaxy
TBA	Slides	Introduction to Muon Spectroscopy	Materials Science
purlGTN:F00315	FAQs	JBrowse is taking a long time to complete?	Sequence analysis
purlGTN:F00249	FAQs	First job I submitted remains grey or running for a long time - is it broken?	Development in Galaxy
purlGTN:F00386	FAQs	Is there a way to filter on the Kalimari database?	Microbiome
purlGTN:F00338	FAQs	TB Variant Report crashes (with an error about KeyError: 'protein')	Variant Analysis
purlGTN:F00370	FAQs	Kraken2 and the k-mer approach for taxonomy classification	Microbiome
purlGTN:F00169	FAQs	How can I get help?	GTN FAQ
purlGTN:F00170	FAQs	Where do I start?	GTN FAQ
purlGTN:F00171	FAQs	Where can I run the hands-on tutorials?	GTN FAQ
purlGTN:F00172	FAQs	How do I use this material?	GTN FAQ
purlGTN:F00213	FAQs	Defining a Learning Pathway	Contributing to the Galaxy Training Material
purlGTN:F00207	FAQs	Library Permission Issues	Galaxy Server administration
purlGTN:F00250	FAQs	Why do I need that big (~5GB!) complicated Docker thing - can I just install the ToolFactory into our local galaxy server from the toolshed?	Development in Galaxy
purlGTN:F00219	FAQs	My jobs are not running / I cannot see the history overview menu	Introduction to Galaxy Analyses
purlGTN:F00208	FAQs	Failing all jobs from a specific user	Galaxy Server administration
purlGTN:F00449	FAQs	How do I find the Maintainer Home pages?	Galaxy Community Building
purlGTN:F00455	FAQs	How do I manage my Galaxy storage?	Galaxy FAQ
purlGTN:F00456	FAQs	How do I manage my repositories on Galaxy?	Galaxy FAQ
purlGTN:F00209	FAQs	Mapping Jobs to Specific Storage By User	Galaxy Server administration
purlGTN:F00287	FAQs	When can you use (or cannot use) Match between runs in MaxQuant?	Proteomics
purlGTN:F00450	FAQs	How do I add a news feed to a Matrix channel?	Galaxy Community Building
purlGTN:F00420	FAQs	How can I plan meetings across timezones?	Galaxy Community Building
purlGTN:F00288	FAQs	Do you need to merge the databases? Because you can select multiple fasta files in MaxQuant.	Proteomics
purlGTN:F00261	FAQs	Where can I find the full listing and description of the columns in each metadata table?	Using Galaxy and Managing your Data
purlGTN:F00210	FAQs	Got lost along the way?	Galaxy Server administration
purlGTN:F00378	FAQs	Where can I read more about this analysis?	Microbiome
purlGTN:F00381	FAQs	Where can I read more about this analysis?	Microbiome
purlGTN:F00289	FAQs	If you use a mqpar file, can you include modifications that are not in the Galaxy version? For instance, propionamide (Cys alkylation by acrylamide).	Proteomics
purlGTN:F00373	FAQs	Can we use the ASaiM-MT workflow on multiple input files at the same time?	Microbiome
purlGTN:F00318	FAQs	MultiQC error for your FastQC reports?	Sequence analysis
purlGTN:F00313	FAQs	In the MVP platform, is it possible to view the genomic location of all the peptides?	Proteomics
purlGTN:F00369	FAQs	What is my.galaxy.training	GTN FAQ
purlGTN:F00425	FAQs	Using the new Contributions Annotation framework	Contributing to the Galaxy Training Material
purlGTN:F00241	FAQs	I cannot run client tests because yarn is not installed.	Development in Galaxy
purlGTN:F00290	FAQs	What does it mean to normalize the LFQ intensities?	Proteomics
purlGTN:F00355	FAQs	Notebook-based tutorials can give different outputs	Single Cell
purlGTN:F00262	FAQs	When will aligned read objects be available for other data types?	Using Galaxy and Managing your Data
purlGTN:F00291	FAQs	Does MaxQuant give as output possibility the PSMs and PEPs?	Proteomics
purlGTN:F00319	FAQs	When I get a warning for base per sequence content, what should I do?	Sequence analysis
purlGTN:F00237	FAQs	Running more than one round of Pilon polishing	Assembly
purlGTN:F00251	FAQs	Only one Planemo test runs at a time. Why doesn't the server allow more than one at once?	Development in Galaxy
purlGTN:F00323	FAQs	On Scanpy PlotEmbed, the tool is failing	Single Cell
purlGTN:F00324	FAQs	On the Scanpy PlotEmbed step, my object doesn’t have Il2ra or Cd8b1 or Cd8a etc.	Single Cell
purlGTN:F00238	FAQs	Can we polish the assembly with long reads too?	Assembly
purlGTN:F00086	FAQs	Getting your API key	Galaxy FAQ
purlGTN:F00308	FAQs	Example histories for the proteogenomics tutorials	Proteomics
purlGTN:F00309	FAQs	Can I use these workflows on datasets generated from our laboratory?	Proteomics
purlGTN:F00310	FAQs	The workflows contain several Query tabular for text manipulation, is there a tutorial for that?	Proteomics
purlGTN:F00311	FAQs	What kind of variants are seen in the output?	Proteomics
purlGTN:F00327	FAQs	How do I know what protocol my data was sequenced with?	Single Cell
purlGTN:F00351	FAQs	Debugging Memory Leaks	Galaxy Server administration
purlGTN:F00263	FAQs	Why don't the aligned read files have quality scores?	Using Galaxy and Managing your Data
purlGTN:F00350	FAQs	Quality Scores	Sequence analysis
purlGTN:F00332	FAQs	Can I use alternative tools for the Quantification step?	Transcriptomics
purlGTN:F00292	FAQs	For the “quantitation method” what is the default if I just leave it as “None”? Label free?	Proteomics
purlGTN:F00266	FAQs	Why does the query `SRR11772204 OR SRR11597145 OR SRR11667145` in the Run Selector not return any results?	Introduction to Galaxy Analyses
purlGTN:F00328	FAQs	Are Barcodes always on R1 and Sequence data on R2?	Single Cell
purlGTN:F00453	FAQs	How do I re-use equivalent jobs in Galaxy (aka Job Cache)?	Galaxy FAQ
purlGTN:F00400	FAQs	Adding your recording to a tutorial or slide deck	GTN FAQ
purlGTN:F00401	FAQs	Recording a video tutorial	GTN FAQ
purlGTN:F00087	FAQs	How to use Custom Reference Genomes?	Galaxy FAQ
purlGTN:F00088	FAQs	Sorting Reference Genome	Galaxy FAQ
purlGTN:F00089	FAQs	Troubleshooting Custom Genome fasta	Galaxy FAQ
purlGTN:F00387	FAQs	Isn't it awkward to find so many humans sequences there, since we filter for them before?	Microbiome
purlGTN:F00358	FAQs	Preparing materials for asynchronous learning: CYOA	Contributing to the Galaxy Training Material
purlGTN:F00359	FAQs	Preparing materials for asynchronous learning: FAQs	Contributing to the Galaxy Training Material
purlGTN:F00360	FAQs	Preparing materials for asynchronous learning: Self-Study	Contributing to the Galaxy Training Material
purlGTN:F00361	FAQs	Preparing materials for asynchronous learning: Tips	Contributing to the Galaxy Training Material
purlGTN:F00252	FAQs	Is the ToolFactory a complete replacement for manual tool building?	Development in Galaxy
purlGTN:F00395	FAQs	Making an element collapsible in a report	Galaxy FAQ
purlGTN:F00396	FAQs	Enhancing tabular dataset previews in reports/pages	Galaxy FAQ
purlGTN:F00432	FAQs	Request Galaxy tools on a specific server	Galaxy FAQ
purlGTN:F00223	FAQs	Additional resources to learn more about proteomic data analysis	Proteomics
purlGTN:F00301	FAQs	Can I use these workflows on datasets generated from our laboratory?	Proteomics
purlGTN:F00335	FAQs	Is it possible to visualize the RNA STAR bam file using the JBrowse tool?	Transcriptomics
purlGTN:F00336	FAQs	RNAstar: Why do we set 36 for 'Length of the genomic sequence around annotated junctions'?	Transcriptomics
purlGTN:F00339	FAQs	My snippy is running for a very long time. Is this normal?	Variant Analysis
purlGTN:F00265	FAQs	What should I do special if on usegalaxy.be?	Using Galaxy and Managing your Data
purlGTN:F00421	FAQs	Why is my tool erroring as 'Above error raised while reading key '/layers' of type from /.'	Single Cell
purlGTN:F00302	FAQs	Which search algorithms are recommended for searching the metaproteomics data?	Proteomics
purlGTN:F00314	FAQs	How many search engines can you use in SearchGUI?	Proteomics
purlGTN:F00303	FAQs	I have a really large search database, what search strategies do you recommend for searching my mass spectrometry dataset?	Proteomics
purlGTN:F00242	FAQs	When I try to run a Selenium test, I get an error	Development in Galaxy
purlGTN:F00090	FAQs	Illumina MiSeq sequencing	Galaxy FAQ
purlGTN:F00091	FAQs	Nanopore sequencing	Galaxy FAQ
purlGTN:F00415	FAQs	Finding a material's PURL or Short URL	GTN FAQ
purlGTN:F00293	FAQs	How many proteins can be identified and quantified in shotgun proteomics?	Proteomics
purlGTN:F00353	FAQs	Use our Single Cell Omics Lab	Single Cell
purlGTN:F00374	FAQs	Can this ASaiM workflow be used for single-end data?	Microbiome
purlGTN:S00082	Slides	Quality Control	Sequence analysis		1h
purlGTN:S00081	Slides	Mapping	Sequence analysis		1h
purlGTN:S00097	Slides	Integrate and query local datasets and distant RDF data with AskOmics using Semantic Web technologies	Transcriptomics
purlGTN:S00098	Slides	Visualization of RNA-Seq results with CummeRbund	Transcriptomics		1h
purlGTN:S00094	Slides	Introduction to Transcriptomics	Transcriptomics
purlGTN:S00096	Slides	Network Analysis with Heinz	Transcriptomics
purlGTN:S00108	Slides	Identification of non-canonical ORFs and their potential biological function	Transcriptomics
purlGTN:S00095	Slides	Whole transcriptome analysis of Arabidopsis thaliana	Transcriptomics
purlGTN:S00129	Slides	Deep Learning (without Generative Artificial Intelligence) using Python elixirai-ml	Statistics and machine learning
purlGTN:S00089	Slides	Feedforward neural networks (FNN) Deep Learning - Part 1	Statistics and machine learning
purlGTN:S00135	Slides	Fine-tuning Protein Language Model	Statistics and machine learning
purlGTN:S00088	Slides	Convolutional neural networks (CNN) Deep Learning - Part 3	Statistics and machine learning
purlGTN:S00132	Slides	Foundational Aspects of Machine Learning elixirai-ml	Statistics and machine learning
purlGTN:S00137	Slides	Regression in Machine Learning	Statistics and machine learning
purlGTN:S00090	Slides	Recurrent neural networks (RNN) Deep Learning - Part 2	Statistics and machine learning
purlGTN:S00091	Slides	Image classification in Galaxy with fruit 360 dataset	Statistics and machine learning		2H
purlGTN:S00133	Slides	Neural networks using Python elixirai-ml	Statistics and machine learning
purlGTN:S00130	Slides	Regulations/standards for AI using DOME elixirai-ml	Statistics and machine learning
purlGTN:S00136	Slides	Introduction to Machine learning	Statistics and machine learning
purlGTN:S00134	Slides	Classification in Machine Learning	Statistics and machine learning
purlGTN:S00042	Slides	Overview of the Galaxy Training Material	Contributing to the Galaxy Training Material
purlGTN:S00128	Slides	Contributing with GitHub via command-line	Contributing to the Galaxy Training Material		30m
purlGTN:S00040	Slides	Creating Slides	Contributing to the Galaxy Training Material
purlGTN:S00101	Slides	Visualisations in Galaxy	Visualisation
purlGTN:S00112	Slides	Friends Don't Let Friends Make Bad Graphs	Visualisation
purlGTN:S00102	Slides	JBrowse	Visualisation
purlGTN:S00100	Slides	Circos	Visualisation
purlGTN:S00105	Slides	BioImage Model Zoo: Advanced models in one-click bioimageioimage analysis	Image analysis using Deep Learning		5m
purlGTN:S00107	Slides	Contribute to the BioImage.IO models bioimageioimage analysis	Image analysis using Deep Learning		10m
purlGTN:S00106	Slides	Welcome to the BioImage Model Zoo bioimageioimage analysis	Image analysis using Deep Learning		5m
purlGTN:S00076	Slides	Introduction to Metabolomics	Metabolomics
purlGTN:S00125	Slides	Predicting EI+ mass spectra with QCxMS	Metabolomics
purlGTN:S00077	Slides	Mass spectrometry: LC-MS preprocessing - advanced	Metabolomics
purlGTN:S00038	Slides	Pangeo ecosystem 101 for everyone climate	Climate		15m
purlGTN:S00039	Slides	The Pangeo ecosystem climate	Climate		15m
purlGTN:S00037	Slides	Introduction to climate data	Climate
purlGTN:S00036	Slides	Functionally Assembled Terrestrial Ecosystem Simulator (FATES) climateecology	Climate		30m
purlGTN:S00056	Slides	Introduction to ATAC-Seq data analysis	Epigenetics		30m
purlGTN:S00060	Slides	Introduction to DNA Methylation data analysis	Epigenetics
purlGTN:S00057	Slides	EWAS Epigenome-Wide Association Studies Introduction	Epigenetics
purlGTN:S00059	Slides	Introduction to ChIP-Seq data analysis	Epigenetics
purlGTN:S00058	Slides	ChIP-seq data analysis	Epigenetics		15M
purlGTN:S00071	Slides	Nucleoli Segmentation & Feature Extraction using CellProfiler	Imaging		4H
purlGTN:S00068	Slides	High Performance Computing for Pairwise Genome Comparison	Genome Annotation		2h
purlGTN:S00067	Slides	Introduction to CRISPR screen analysis	Genome Annotation		5m
purlGTN:S00069	Slides	Introduction to Genome Annotation	Genome Annotation	Intermediate
purlGTN:S00066	Slides	Refining Genome Annotations with Apollo prokaryote	Genome Annotation		5m
purlGTN:S00070	Slides	Essential genes detection with Transposon insertion sequencing bacteriatnseqessential genes	Genome Annotation		7H
purlGTN:S00065	Slides	Genome annotation with Prokka prokaryote	Genome Annotation		1h
purlGTN:S00073	Slides	Introduction to Galaxy	Introduction to Galaxy Analyses
purlGTN:S00075	Slides	Options for using Galaxy	Introduction to Galaxy Analyses
purlGTN:S00072	Slides	A Short Introduction to Galaxy	Introduction to Galaxy Analyses
purlGTN:S00127	Slides	An earth-system RO-Crate earth-systemro-crateoceanmarine omics	FAIR Data, Workflows, and Research		1H
purlGTN:S00126	Slides	Intro to DataPLANT ARCs	FAIR Data, Workflows, and Research
purlGTN:S00029	Slides	Deeper look into Genome Assembly algorithms	Assembly	Intermediate
purlGTN:S00138	Slides	Genome assembly and assembly QC - Introduction short version	Assembly	Introductory	1h
purlGTN:S00034	Slides	An introduction to get started in genome assembly and annotation	Assembly	Introductory	1h
purlGTN:S00031	Slides	Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads covid19	Assembly		4h
purlGTN:S00030	Slides	Genome assembly quality control.	Assembly	Introductory
purlGTN:S00032	Slides	De Bruijn Graph Assembly	Assembly		2h
purlGTN:S00035	Slides	Unicycler Assembly prokaryote	Assembly		4h
purlGTN:S00033	Slides	An Introduction to Genome Assembly	Assembly		30m
purlGTN:S00052	Slides	Tool Shed: sharing Galaxy tools	Development in Galaxy		3h
purlGTN:S00050	Slides	Introduction to the ToolFactory tutorial.	Development in Galaxy
purlGTN:S00046	Slides	Prerequisites for building software/conda packages	Development in Galaxy		1h
purlGTN:S00043	Slides	Galaxy Code Architecture	Development in Galaxy		150m
purlGTN:S00044	Slides	Scripting Galaxy using the API and BioBlend	Development in Galaxy		2h
purlGTN:S00055	Slides	Galaxy Webhooks	Development in Galaxy		1h
purlGTN:S00053	Slides	Visualizations: JavaScript Plugins	Development in Galaxy		1h
purlGTN:S00047	Slides	Tool Dependencies and Containers	Development in Galaxy		45m
purlGTN:S00054	Slides	Generic plugins	Development in Galaxy		90m
purlGTN:S00048	Slides	Galaxy Interactive Environments	Development in Galaxy		90m
purlGTN:S00049	Slides	Galaxy Interactive Tours	Development in Galaxy		3h
purlGTN:S00051	Slides	Tool development and integration into Galaxy	Development in Galaxy		6h
purlGTN:S00045	Slides	Tool Dependencies and Conda	Development in Galaxy		75m
purlGTN:S00080	Slides	Introduction to proteomics, protein identification, quantification and statistical modelling	Proteomics
purlGTN:S00062	Slides	Getting data into Galaxy	Using Galaxy and Managing your Data
purlGTN:S00063	Slides	Introduction to SRA Aligned Read Format and Cloud Metadata for SARS-CoV-2 ncbicovid19	Using Galaxy and Managing your Data		10m
purlGTN:S00061	Slides	Galaxy workflows in Dockstore	Using Galaxy and Managing your Data
purlGTN:S00064	Slides	Submitting SARS-CoV-2 sequences to ENA	Using Galaxy and Managing your Data		1h
purlGTN:S00093	Slides	Workshop Kickoff	Teaching and Hosting Galaxy training		30m
purlGTN:S00092	Slides	Overview of the Galaxy Training Material for Instructors	Teaching and Hosting Galaxy training		10M
purlGTN:S00119	Slides	Phylogenetics - Back to Basics - Phylogenetic Networks	Evolution
purlGTN:S00121	Slides	Phylogenetics - Back to Basics - Building Trees	Evolution
purlGTN:S00116	Slides	Phylogenetics - Back to Basics - Introduction	Evolution
purlGTN:S00117	Slides	Phylogenetics - Back to Basics - Estimating trees from alignments	Evolution
purlGTN:S00118	Slides	Phylogenetics - Back to Basics - Multiple Sequence Alignment	Evolution
purlGTN:S00120	Slides	Phylogenetics - Back to Basics - Terminology	Evolution
purlGTN:S00014	Slides	Galaxy Interactive Tools	Galaxy Server administration
purlGTN:S00027	Slides	User, Role, Group, Quota, and Authentication managment	Galaxy Server administration		15m
purlGTN:S00028	Slides	uWSGI	Galaxy Server administration
purlGTN:S00004	Slides	Galaxy on the Cloud	Galaxy Server administration
purlGTN:S00103	Slides	Server Maintenance: Cleanup, Backup, and Restoration	Galaxy Server administration		30m
purlGTN:S00019	Slides	Gearing towards production	Galaxy Server administration
purlGTN:S00021	Slides	Reference Genomes in Galaxy	Galaxy Server administration
purlGTN:S00008	Slides	Galactic Database	Galaxy Server administration
purlGTN:S00013	Slides	Galaxy Monitoring with gxadmin	Galaxy Server administration
purlGTN:S00000	Slides	Advanced customisation of a Galaxy instance	Galaxy Server administration
purlGTN:S00023	Slides	Controlling Galaxy with systemd or Supervisor	Galaxy Server administration
purlGTN:S00010	Slides	External Authentication	Galaxy Server administration
purlGTN:S00022	Slides	Server: Other	Galaxy Server administration		1h
purlGTN:S00015	Slides	Galaxy from an administrator's point of view	Galaxy Server administration		20m
purlGTN:S00002	Slides	Galaxy Installation with Ansible	Galaxy Server administration
purlGTN:S00006	Slides	Reference Data with CVMFS	Galaxy Server administration
purlGTN:S00009	Slides	Empathy	Galaxy Server administration
purlGTN:S00024	Slides	Terraform	Galaxy Server administration
purlGTN:S00018	Slides	Storage Management	Galaxy Server administration
purlGTN:S00026	Slides	Galaxy Troubleshooting	Galaxy Server administration
purlGTN:S00011	Slides	Docker and Galaxy	Galaxy Server administration		1h
purlGTN:S00017	Slides	Galaxy Monitoring with Telegraf and Grafana	Galaxy Server administration
purlGTN:S00122	Slides	Galaxy Administrator Time Burden and Technology Usage deployingmaintenancesurvey	Galaxy Server administration
purlGTN:S00012	Slides	Galaxy Monitoring	Galaxy Server administration
purlGTN:S00007	Slides	Storage Management	Galaxy Server administration
purlGTN:S00025	Slides	Galaxy Tool Management with Ephemeris	Galaxy Server administration
purlGTN:S00005	Slides	Connecting Galaxy to a compute cluster features	Galaxy Server administration
purlGTN:S00001	Slides	Ansible	Galaxy Server administration
purlGTN:S00020	Slides	Running Jobs on Remote Resources with Pulsar jobs	Galaxy Server administration		60m
purlGTN:S00003	Slides	Galaxy and Celery	Galaxy Server administration
purlGTN:S00113	Slides	A brief history of modern biology	Foundations of Data Science
purlGTN:S00109	Slides	Bioinformatics Data Types and Databases	Foundations of Data Science		1h
purlGTN:S00115	Slides	Introduction to metatranscriptomics	Microbiome
purlGTN:S00114	Slides	Introduction to Microbiome Analysis	Microbiome
purlGTN:S00099	Slides	Introduction to Variant analysis	Variant Analysis
purlGTN:S00111	Slides	Trajectory analysis	Single Cell
purlGTN:S00086	Slides	Dealing with Cross-Contamination in Fixed Barcode Protocols	Single Cell		1h
purlGTN:S00087	Slides	Clustering 3K PBMCs with Scanpy	Single Cell		1H
purlGTN:S00110	Slides	Automated Cell Annotation	Single Cell
purlGTN:S00085	Slides	Plates, Batches, and Barcodes	Single Cell		1h
purlGTN:S00123	Slides	Single-cell Formats and Resources	Single Cell
purlGTN:S00124	Slides	GO Enrichment Analysis on Single-Cell RNA-Seq Data	Single Cell		1h
purlGTN:S00084	Slides	An introduction to scRNA-seq data analysis	Single Cell	Intermediate	30m
TBA	Slides	Lorum Ipsum testpagelanguage		Introductory	42M
TBA	Slides	Una breve introducción a Galaxy	Introduction to Galaxy Analyses
TBA	Slides	Introducción al análisis de datos de scRNA-seq single-cell	Single Cell		30m
TBA	Slides	Lorum Ipsum testpagelanguage		Introductory	42M
TBA	Slides	Una Breve Introducción a Galaxy	Introduction to Galaxy Analyses
TBA	Slides	Una introducción al análisis de datos scRNA-seq single-cell	Single Cell	Intermediate	30m
TBA	Slides	Lorum Ipsum testpagelanguage		Introductory	42M
TBA	Slides	Lorum Ipsum testpagelanguage		Intermediate	42M
purlGTN:F00316	FAQs	What is a SNP?	Sequence analysis
purlGTN:F00294	FAQs	MSStats: what does ‘compare groups = yes’ mean? And the comparison matrix to define the contrast between the 2 groups?	Proteomics
purlGTN:F00337	FAQs	In 'infer experiments' I get unequal numbers, but in the IGV it looks like it is unstranded. What does this mean?	Transcriptomics
purlGTN:F00304	FAQs	What other methods are available to study the functional state of the microbiome within Galaxy?	Proteomics
purlGTN:F00257	FAQs	Is it possible to subsample some samples if you have more reads?	Epigenetics
purlGTN:F00092	FAQs	Where do I get more support?	Galaxy FAQ
purlGTN:F00093	FAQs	Contacting Galaxy Administrators	Galaxy FAQ
purlGTN:F00371	FAQs	What is Taxonomy?	Microbiome
purlGTN:F00228	FAQs	Can RNA-seq techniques be applied to scRNA-seq?	Single Cell
purlGTN:F00264	FAQs	Are these data free to use and download?	Using Galaxy and Managing your Data
purlGTN:F00295	FAQs	Does MaxQuant in Galaxy support TMT, iTRAQ, etc.?	Proteomics
purlGTN:F00340	FAQs	Do I have to run the tools in the order of the tutorial?	Variant Analysis
purlGTN:F00094	FAQs	Changing the tool version	Galaxy FAQ
purlGTN:F00095	FAQs	Organizing the tool panel	Galaxy FAQ
purlGTN:F00096	FAQs	Where is the tool help?	Galaxy FAQ
purlGTN:F00097	FAQs	Viewing tool logs (`stdout` and `stderr`)	Galaxy FAQ
purlGTN:F00098	FAQs	If a Tool is Missing	Galaxy FAQ
purlGTN:F00135	FAQs	Para volver a ejecutar una herramienta	Galaxy FAQ
purlGTN:F00099	FAQs	Re-running a tool	Galaxy FAQ
purlGTN:F00100	FAQs	Selecting a dataset collection as input	Galaxy FAQ
purlGTN:F00101	FAQs	Select multiple datasets	Galaxy FAQ
purlGTN:F00102	FAQs	Multipile similar tools available	Galaxy FAQ
purlGTN:F00103	FAQs	Sorting Tools	Galaxy FAQ
purlGTN:F00104	FAQs	Tool doesn't recognize input datasets	Galaxy FAQ
purlGTN:F00305	FAQs	Which version of SearchGUI and PeptideShaker shall I use for this tutorial?	Proteomics
purlGTN:F00330	FAQs	I’m using the same training data, tools, and parameters as the tutorial, but I get a different number of transcripts with a significant change in gene expression between the G1E and megakaryocyte cellular states. Why?	Transcriptomics
purlGTN:F00416	FAQs	Translations within the GTN	GTN FAQ
purlGTN:F00105	FAQs	Understanding 'canceled by admin' or cluster failure error messages	Galaxy FAQ
purlGTN:F00106	FAQs	Understanding 'exceeds memory allocation' error messages	Galaxy FAQ
purlGTN:F00107	FAQs	Understanding input error messages	Galaxy FAQ
purlGTN:F00108	FAQs	Understanding ValueError error messages	Galaxy FAQ
purlGTN:F00109	FAQs	Understanding walltime error messages	Galaxy FAQ
purlGTN:T00054	Hands-on	Protein target prediction of a bioactive ligand with Align-it and ePharmaLib	Computational chemistry	Intermediate	2H
purlGTN:T00381	Hands-on	Data management in Medicinal Chemistry fairdata-managementmedicinal-chemistrycomputational-chemistry	Computational chemistry	Introductory	1H
purlGTN:T00051	Hands-on	Running molecular dynamics simulations using GROMACS	Computational chemistry	Intermediate	2H
purlGTN:T00053	Hands-on	Setting up molecular systems	Computational chemistry	Intermediate	2H
purlGTN:T00048	Hands-on	Protein-ligand docking	Computational chemistry	Intermediate	3H
purlGTN:T00050	Hands-on	High Throughput Molecular Dynamics and Analysis	Computational chemistry	Advanced	3H
purlGTN:T00052	Hands-on	Running molecular dynamics simulations using NAMD	Computational chemistry	Intermediate	3H
purlGTN:T00049	Hands-on	Virtual screening of the SARS-CoV-2 main protease with rxDock and pose scoring covid19one-health	Computational chemistry	Intermediate	2H
purlGTN:T00047	Hands-on	Analysis of molecular dynamics simulations	Computational chemistry	Intermediate	1H
purlGTN:T00383	Hands-on	Clean and manage Sanger sequences from raw files to aligned consensus	Sequence analysis		1H
purlGTN:T00439	Hands-on	Screening assembled genomes for contamination using NCBI FCS	Sequence analysis		90M
purlGTN:T00238	Hands-on	NCBI BLAST+ against the MAdLand plants	Sequence analysis		15m
purlGTN:T00356	Hands-on	SARS-CoV-2 Viral Sample Alignment and Variant Visualization covid19gmodjbrowse1	Sequence analysis	Introductory	1H
purlGTN:T00446	Hands-on	Quality and contamination control in bacterial isolate using Illumina MiSeq Data illuminabacteriamicrogalaxy	Sequence analysis	Introductory	2H
purlGTN:T00512	Hands-on	Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes virology	Sequence analysis	Introductory	1H
purlGTN:T00511	Hands-on	Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants plants	Sequence analysis		2H
purlGTN:T00239	Hands-on	Quality Control	Sequence analysis	Introductory	1H30M
purlGTN:T00236	Hands-on	Removal of human reads from SARS-CoV-2 sequencing data covid19	Sequence analysis	Intermediate	1h
purlGTN:T00237	Hands-on	Mapping	Sequence analysis	Introductory	1h
purlGTN:T00301	Hands-on	1: RNA-Seq reads to counts collectionsmouseQC	Transcriptomics		3h
purlGTN:T00289	Hands-on	De novo transcriptome reconstruction with RNA-Seq	Transcriptomics		6h
purlGTN:T00297	Hands-on	RNA-Seq analysis with AskOmics Interactive Tool	Transcriptomics		2H
purlGTN:T00437	Hands-on	Pathway analysis with the MINERVA Platform bulkrna-seqvizcyoa	Transcriptomics	Intermediate	1h
purlGTN:T00298	Hands-on	2: RNA-seq counts to genes limma-voommouseQC	Transcriptomics		2h
purlGTN:T00291	Hands-on	GO Enrichment Analysis	Transcriptomics		1h
purlGTN:T00346	Hands-on	RNA-seq Alignment with STAR	Transcriptomics		90M
purlGTN:T00302	Hands-on	Visualization of RNA-Seq results with CummeRbund	Transcriptomics		1h
purlGTN:T00300	Hands-on	3: RNA-seq genes to pathways mouse	Transcriptomics		2h
purlGTN:T00293	Hands-on	Network analysis with Heinz metatranscriptomicsnetwork analysis	Transcriptomics		1h30m
purlGTN:T00299	Hands-on	RNA Seq Counts to Viz in R interactive-tools	Transcriptomics		1H
purlGTN:T00294	Hands-on	Reference-based RNAseq data analysis (long)	Transcriptomics		1h
purlGTN:T00345	Hands-on	Genome-wide alternative splicing analysis alternative splicingisoform switching	Transcriptomics	Advanced	3H
purlGTN:T00304	Hands-on	Visualization of RNA-Seq results with Volcano Plot	Transcriptomics	Introductory	30m
purlGTN:T00305	Hands-on	Visualization of RNA-Seq results with Volcano Plot in R interactive-tools	Transcriptomics	Intermediate	1H
purlGTN:T00306	Hands-on	Small Non-coding RNA Clustering using BlockClust	Transcriptomics		1H
purlGTN:T00292	Hands-on	Whole transcriptome analysis of Arabidopsis thaliana miRNAplantsstress tolerance	Transcriptomics		2H
purlGTN:T00296	Hands-on	RNA-RNA interactome data analysis	Transcriptomics		2H
purlGTN:T00290	Hands-on	De novo transcriptome assembly, annotation, and differential expression analysis	Transcriptomics		3H
purlGTN:T00288	Hands-on	CLIP-Seq data analysis from pre-processing to motif detection	Transcriptomics		6h
purlGTN:T00307	Hands-on	Differential abundance testing of small RNAs	Transcriptomics		3h
purlGTN:T00295	Hands-on	Reference-based RNA-Seq data analysis bulkrna-seqcollectionsdrosophilaQCcyoa	Transcriptomics	Introductory	8h
purlGTN:T00303	Hands-on	Visualization of RNA-Seq results with heatmap2	Transcriptomics		1h
purlGTN:T00260	Hands-on	PAPAA PI3K_OG: PanCancer Aberrant Pathway Activity Analysis Machine learningPan-cancercancer biomarkersoncogenes and tumor suppressor genes	Statistics and machine learning		1H30M
purlGTN:T00523	Hands-on	Predicting Mutation Impact with Zero-shot Learning using a pretrained DNA LLM ELIXIRAI & MLLarge Language Modelwork-in-progressjupyter-notebook	Statistics and machine learning	Intermediate	3H
purlGTN:T00261	Hands-on	Age prediction using machine learning	Statistics and machine learning		2H
purlGTN:T00522	Hands-on	Optimizing DNA Sequences for Biological Functions using a DNA LLM ELIXIRAI & MLLarge Language Modelwork-in-progressjupyter-notebook	Statistics and machine learning	Intermediate	3H
purlGTN:T00266	Hands-on	A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy interactive-toolsmachine-learningdeep-learningjupyter-labimage-segmentationprotein-3D-structure	Statistics and machine learning		1H
purlGTN:T00527	Hands-on	Text-Mining Differences in Chinese Newspaper Articles HumanitiesText_mining	Statistics and machine learning	Introductory	1H
purlGTN:T00263	Hands-on	Machine learning: classification and regression	Statistics and machine learning		1H
purlGTN:T00517	Hands-on	Deep Learning (without Generative Artificial Intelligence) using Python elixirai-mlwork-in-progressjupyter-notebook	Statistics and machine learning	Intermediate	3H
purlGTN:T00521	Hands-on	Generating Artificial Yeast DNA Sequences using a DNA LLM ELIXIRAI & MLLarge Language Modelwork-in-progressjupyter-notebook	Statistics and machine learning	Intermediate	3H
purlGTN:T00272	Hands-on	Text-mining with the SimText toolset interactive-tools	Statistics and machine learning		1H
purlGTN:T00258	Hands-on	Deep Learning (Part 1) - Feedforward neural networks (FNN)	Statistics and machine learning		2H
purlGTN:T00267	Hands-on	Introduction to Machine Learning using R interactive-tools	Statistics and machine learning	Intermediate	3H
purlGTN:T00442	Hands-on	Fine tune large protein model (ProtTrans) using HuggingFace interactive-toolsmachine-learningdeep-learningjupyter-labfine-tuningdephosphorylation-site-prediction	Statistics and machine learning		1H
purlGTN:T00525	Hands-on	Building the LORIS LLR6 PanCancer Model Using PyCaret LORIS Score ModelMachine LearningPyCaret	Statistics and machine learning	Intermediate	1H
purlGTN:T00520	Hands-on	Pretraining a Large Language Model (LLM) from Scratch on DNA Sequences ELIXIRAI & MLLarge Language Modelwork-in-progressjupyter-notebook	Statistics and machine learning	Intermediate	3H
purlGTN:T00337	Hands-on	Supervised Learning with Hyperdimensional Computing	Statistics and machine learning	Intermediate	30m
purlGTN:T00257	Hands-on	Deep Learning (Part 3) - Convolutional neural networks (CNN)	Statistics and machine learning		2H
purlGTN:T00524	Hands-on	Foundational Aspects of Machine Learning using Python elixirai-mlwork-in-progressjupyter-notebook	Statistics and machine learning	Intermediate	3H
purlGTN:T00268	Hands-on	Introduction to deep learning	Statistics and machine learning		1H
purlGTN:T00271	Hands-on	Regression in Machine Learning	Statistics and machine learning		2H
purlGTN:T00519	Hands-on	Fine-tuning a LLM for DNA Sequence Classification ELIXIRAI & MLLarge Language Modelwork-in-progressjupyter-notebook	Statistics and machine learning	Intermediate	3H
purlGTN:T00259	Hands-on	Deep Learning (Part 2) - Recurrent neural networks (RNN)	Statistics and machine learning		2H
purlGTN:T00265	Hands-on	Image classification in Galaxy with fruit 360 dataset	Statistics and machine learning		2H
purlGTN:T00526	Hands-on	Neural networks using Python elixirai-mlwork-in-progressjupyter-notebook	Statistics and machine learning	Intermediate	3H
purlGTN:T00518	Hands-on	Regulations/standards for AI using DOME elixirai-mlwork-in-progress	Statistics and machine learning	Intermediate	3H
purlGTN:T00467	Hands-on	Train and Test a Deep learning image classifier with Galaxy-Ludwig MNISTDeep learningLudwig	Statistics and machine learning	Intermediate	40M
purlGTN:T00270	Hands-on	Basics of machine learning	Statistics and machine learning		30M
purlGTN:T00264	Hands-on	Clustering in Machine Learning	Statistics and machine learning		2H
purlGTN:T00262	Hands-on	Classification in Machine Learning	Statistics and machine learning		2H
purlGTN:T00269	Hands-on	Interval-Wise Testing for omics data	Statistics and machine learning		1h
purlGTN:T00062	Hands-on	Design and plan session, course, materials elixirtrain-the-trainers	Contributing to the Galaxy Training Material		60m
purlGTN:T00058	Hands-on	Creating content in Markdown	Contributing to the Galaxy Training Material		15m
purlGTN:T00055	Hands-on	Updating diffs in admin training	Contributing to the Galaxy Training Material		5m
purlGTN:T00060	Hands-on	Tools, Data, and Workflows for tutorials	Contributing to the Galaxy Training Material		30m
purlGTN:T00059	Hands-on	Adding Quizzes to your Tutorial	Contributing to the Galaxy Training Material		15m
purlGTN:T00057	Hands-on	Creating a new tutorial	Contributing to the Galaxy Training Material		15m
purlGTN:T00065	Hands-on	Contributing with GitHub via its interface	Contributing to the Galaxy Training Material		20m
purlGTN:T00470	Hands-on	Single Cell Publication - Data Plotting Rrmarkdown-notebookjupyter-notebook	Contributing to the Galaxy Training Material	Advanced	1H
purlGTN:T00068	Hands-on	Teaching Python	Contributing to the Galaxy Training Material		2h
purlGTN:T00061	Hands-on	Creating Interactive Galaxy Tours	Contributing to the Galaxy Training Material		15m
purlGTN:T00483	Hands-on	Contributing to the Galaxy Training Network with GitHub	Contributing to the Galaxy Training Material		30m
purlGTN:T00067	Hands-on	Principles of learning and how they apply to training and teaching elixirtrain-the-trainers	Contributing to the Galaxy Training Material		2h
purlGTN:T00063	Hands-on	Generating PDF artefacts of the website	Contributing to the Galaxy Training Material		10m
purlGTN:T00056	Hands-on	Including a new topic	Contributing to the Galaxy Training Material		30m
purlGTN:T00465	Hands-on	FAIR-by-Design methodology FAIR-by-Design Learning MaterialsFAIR Learning ObjectsFAIR-by-Design Methodologywork-in-progress	Contributing to the Galaxy Training Material	Introductory	20M
purlGTN:T00484	Hands-on	Preview the GTN website as you edit your training material Choose your own AdventureGitPodCodeSpacesCommand-line	Contributing to the Galaxy Training Material		20m
purlGTN:T00071	Hands-on	Adding auto-generated video to your slides	Contributing to the Galaxy Training Material		20m
purlGTN:T00474	Hands-on	Updating tool versions in a tutorial	Contributing to the Galaxy Training Material		1H
purlGTN:T00469	Hands-on	Single Cell Publication - Data Analysis Ruby	Contributing to the Galaxy Training Material	Advanced	1H
purlGTN:T00070	Hands-on	GTN Metadata	Contributing to the Galaxy Training Material		10m
purlGTN:T00373	Hands-on	Ploting a Microbial Genome with Circos	Visualisation	Intermediate	30m
purlGTN:T00322	Hands-on	Genomic Data Visualisation with JBrowse gmodjbrowse1	Visualisation	Intermediate	1h
purlGTN:T00321	Hands-on	Visualisation with Circos	Visualisation	Intermediate	2h
purlGTN:T00198	Hands-on	Mass spectrometry imaging: Examining the spatial distribution of analytes	Metabolomics	Introductory	1H
purlGTN:T00196	Hands-on	Mass spectrometry: LC-MS data processing	Metabolomics	Introductory	2H
purlGTN:T00458	Hands-on	Predicting EI+ mass spectra with QCxMS	Metabolomics	Introductory	1H
purlGTN:T00197	Hands-on	Mass spectrometry: LC-MS preprocessing with XCMS	Metabolomics	Intermediate	3h
purlGTN:T00194	Hands-on	Mass spectrometry : GC-MS analysis with metaMS package	Metabolomics	Introductory	2H
purlGTN:T00344	Hands-on	Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)	Metabolomics	Intermediate	2H
purlGTN:T00195	Hands-on	Mass spectrometry: LC-MS analysis	Metabolomics		3h
purlGTN:T00199	Hands-on	Mass spectrometry imaging: Finding differential analytes	Metabolomics	Intermediate	2H
purlGTN:T00044	Hands-on	Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools pangeo	Climate		1H
purlGTN:T00428	Hands-on	Analyse Argo data earth-systemoceanpangeoargo	Climate		1H
purlGTN:T00481	Hands-on	Collaboration with JupyterGIS	Climate		30M
purlGTN:T00045	Hands-on	Pangeo Notebook in Galaxy - Introduction to Xarray pangeointeractive-toolsjupyter-notebook	Climate		1H
purlGTN:T00396	Hands-on	Sentinel 5P data visualisation earth-systemvolcanosatellite data	Climate		1H
purlGTN:T00375	Hands-on	Ocean Data View (ODV) earth-systemoceangeographical information systemODVnetcdf datamapsmarine data	Climate		1H
purlGTN:T00043	Hands-on	Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Galaxy Climate JupyterLab interactive-tools	Climate		6H
purlGTN:T00457	Hands-on	Getting your hands-on earth data earth-systemoceanlandatmospherebiodiversity	Climate		1H
purlGTN:T00376	Hands-on	Ocean's variables study earth-systemoceannetcdf data	Climate		1H
purlGTN:T00046	Hands-on	Visualize Climate data with Panoply netCDF viewer interactive-tools	Climate		1H
purlGTN:T00041	Hands-on	Getting your hands-on climate data	Climate		1H
purlGTN:T00042	Hands-on	Functionally Assembled Terrestrial Ecosystem Simulator (FATES) interactive-tools	Climate		4H
purlGTN:T00137	Hands-on	ATAC-Seq data analysis	Epigenetics		3h
purlGTN:T00424	Hands-on	CUT&RUN data analysis	Epigenetics		3h
purlGTN:T00141	Hands-on	Hi-C analysis of Drosophila melanogaster cells using HiCExplorer	Epigenetics		1h
purlGTN:T00138	Hands-on	Identification of the binding sites of the Estrogen receptor ChIP-seqwork-in-progress	Epigenetics		3h
purlGTN:T00143	Hands-on	Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1) ChIP-seq	Epigenetics		3h
purlGTN:T00139	Hands-on	Infinium Human Methylation BeadChip	Epigenetics		1h
purlGTN:T00140	Hands-on	Formation of the Super-Structures on the Inactive X ChIP-seq	Epigenetics		3h
purlGTN:T00142	Hands-on	DNA Methylation data analysis	Epigenetics		3h
purlGTN:T00476	Hands-on	Make your tools available on your subdomain subdomainearth-systeminteractive-tools	Galaxy Community Building		30m
purlGTN:T00475	Hands-on	Creation of an interactive Galaxy tools table for your community CommunitySIG	Galaxy Community Building	Introductory	1H
purlGTN:T00443	Hands-on	Creating a Special Interest Group	Galaxy Community Building		30m
purlGTN:T00482	Hands-on	Creating community content	Galaxy Community Building		30M
purlGTN:T00444	Hands-on	What's a Special Interest Group?	Galaxy Community Building		15m
purlGTN:T00499	Hands-on	Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy	Imaging	Intermediate	1H
purlGTN:T00472	Hands-on	Tracking of mitochondria and capturing mitoflashes bioimagingmitoflashmitochondria	Imaging		1H
purlGTN:T00181	Hands-on	Introduction to Image Analysis using Galaxy HeLa	Imaging	Introductory	1H
TBA	Hands-on	Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy bioimaging	Imaging	Introductory	1H
purlGTN:T00183	Hands-on	Nucleoli segmentation and feature extraction using CellProfiler	Imaging		4H
purlGTN:T00334	Hands-on	End-to-End Tissue Microarray Image Analysis with Galaxy-ME	Imaging		3H
purlGTN:T00498	Hands-on	Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines RNAsmFISHbioimaging	Imaging	Introductory	30m
purlGTN:T00500	Hands-on	Using BioImage.IO models for image analysis in Galaxy bioimagingAI	Imaging		30M
purlGTN:T00182	Hands-on	Object tracking using CellProfiler	Imaging		1H
purlGTN:T00180	Hands-on	Analyse HeLa fluorescence siRNA screen HeLa	Imaging	Intermediate	1H
purlGTN:T00494	Hands-on	Dataset construction for bacterial comparative genomics microgalaxywork-in-progress	Genome Annotation	Introductory	1H
purlGTN:T00176	Hands-on	From small to large-scale genome comparison plantsprokaryote	Genome Annotation		2H
purlGTN:T00497	Hands-on	Genome annotation with Braker3 eukaryotaBraker3jbrowse1	Genome Annotation	Intermediate	8h
purlGTN:T00451	Hands-on	Genome annotation with Helixer eukaryotahelixerjbrowse1	Genome Annotation	Intermediate	4h
purlGTN:T00171	Hands-on	CRISPR screen analysis genome editingCRISPRessential genescell line	Genome Annotation		2H
purlGTN:T00174	Hands-on	Comparative gene analysis in unannotated genomes evolutionannotationvgpcookbookeukaryoteprokaryotemicrogalaxy	Genome Annotation		30M
purlGTN:T00175	Hands-on	Genome Annotation prokaryotework-in-progress	Genome Annotation	Introductory	2H
purlGTN:T00177	Hands-on	Long non-coding RNAs (lncRNAs) annotation with FEELnc eukaryote	Genome Annotation	Intermediate	2h
purlGTN:T00495	Hands-on	Bacterial genome quality control microgalaxywork-in-progress	Genome Annotation	Introductory	1H
purlGTN:T00166	Hands-on	Genome annotation with Maker gmodeukaryotejbrowse1maker	Genome Annotation	Advanced	4h
purlGTN:T00401	Hands-on	Identification of AMR genes in an assembled bacterial genome gmodilluminaamrone-healthjbrowse1microgalaxy	Genome Annotation	Introductory	2h
purlGTN:T00420	Hands-on	Secondary metabolite discovery	Genome Annotation		3H
purlGTN:T00169	Hands-on	Refining Genome Annotations with Apollo (prokaryotes) gmodprokaryotemicrogalaxyjbrowse1apollo2	Genome Annotation	Intermediate	3h
purlGTN:T00172	Hands-on	Genome annotation with Funannotate gmodeukaryotejbrowse1	Genome Annotation	Intermediate	8h
purlGTN:T00179	Hands-on	Essential genes detection with Transposon insertion sequencing bacteriatnseqessential genesmicrogalaxy	Genome Annotation		7H
purlGTN:T00170	Hands-on	Refining Genome Annotations with Apollo (eukaryotes) gmodeukaryotecyoajbrowse1apollo2	Genome Annotation	Intermediate	3h
purlGTN:T00178	Hands-on	Masking repeats with RepeatMasker eukaryote	Genome Annotation	Introductory	1H
purlGTN:T00167	Hands-on	Genome annotation with Maker (short) gmodeukaryotemakerjbrowse1	Genome Annotation	Intermediate	2h
purlGTN:T00370	Hands-on	Creating an Official Gene Set gmodapollo2work-in-progress	Genome Annotation		30M
purlGTN:T00173	Hands-on	Functional annotation of protein sequences eukaryote	Genome Annotation	Introductory	1h
purlGTN:T00168	Hands-on	Genome annotation with Prokka gmodprokaryotemicrogalaxyjbrowse1	Genome Annotation	Introductory	1h
purlGTN:T00403	Hands-on	Bacterial Genome Annotation gmodilluminabacteriamicrogalaxyjbrowse1	Genome Annotation	Introductory	3H
purlGTN:T00496	Hands-on	Bacterial pangenomics	Genome Annotation	Introductory	1H
purlGTN:T00185	Hands-on	Upload data to Galaxy	Introduction to Galaxy Analyses	Introductory	40m
purlGTN:T00189	Hands-on	From peaks to genes	Introduction to Galaxy Analyses	Introductory	3H
purlGTN:T00188	Hands-on	NGS data logistics	Introduction to Galaxy Analyses		1H30M
purlGTN:T00193	Hands-on	IGV Introduction	Introduction to Galaxy Analyses		2H
purlGTN:T00436	Hands-on	Very Short Introductions: QC	Introduction to Galaxy Analyses		30M
purlGTN:T00192	Hands-on	How to reproduce published Galaxy analyses	Introduction to Galaxy Analyses	Introductory	1H
purlGTN:T00186	Hands-on	Galaxy Basics for genomics	Introduction to Galaxy Analyses	Introductory	1H
purlGTN:T00191	Hands-on	Introduction to Genomics and Galaxy	Introduction to Galaxy Analyses	Introductory	2H30M
purlGTN:T00184	Hands-on	Data Manipulation Olympics cyoa	Introduction to Galaxy Analyses	Introductory	1h
purlGTN:T00190	Hands-on	A short introduction to Galaxy español	Introduction to Galaxy Analyses	Introductory	40m
purlGTN:T00187	Hands-on	Galaxy Basics for everyone	Introduction to Galaxy Analyses	Introductory	1H30M
purlGTN:T00339	Hands-on	Best practices for workflows in GitHub repositories ro-cratejupyter-notebook	FAIR Data, Workflows, and Research		30M
purlGTN:T00351	Hands-on	FAIR in a nutshell fairopendata stewardship	FAIR Data, Workflows, and Research		10M
purlGTN:T00369	Hands-on	Sequence data submission to ENA FAIRENA	FAIR Data, Workflows, and Research		1H
purlGTN:T00454	Hands-on	Introduction to Data Management Plan (DMP) for Peatland Research and PeatDataHub fairopendata management plan	FAIR Data, Workflows, and Research	Introductory	30M
purlGTN:T00350	Hands-on	FAIR Galaxy Training Material fairgtntraining	FAIR Data, Workflows, and Research		30M
purlGTN:T00368	Hands-on	Making clinical datasets FAIR fairopendata stewardship	FAIR Data, Workflows, and Research		1H
purlGTN:T00431	Hands-on	Data Registration fairdmpdata stewardship	FAIR Data, Workflows, and Research		40M
purlGTN:T00341	Hands-on	RO-Crate in Python ro-cratejupyter-notebook	FAIR Data, Workflows, and Research		30M
purlGTN:T00348	Hands-on	RO-Crate - Introduction	FAIR Data, Workflows, and Research	Introductory	30M
purlGTN:T00433	Hands-on	FAIR and its Origins fairdmpdata stewardship	FAIR Data, Workflows, and Research		40M
purlGTN:T00340	Hands-on	Exporting Workflow Run RO-Crates from Galaxy ro-crateworkflows	FAIR Data, Workflows, and Research		30m
purlGTN:T00362	Hands-on	FAIR Bioimage Metadata fairdata managementbioimaging	FAIR Data, Workflows, and Research		15m
purlGTN:T00349	Hands-on	FAIR data management solutions fairdmpdata stewardship	FAIR Data, Workflows, and Research		10M
purlGTN:T00343	Hands-on	Workflow Run RO-Crate Introduction ro-crate	FAIR Data, Workflows, and Research		30M
purlGTN:T00432	Hands-on	Metadata fairdmpdata stewardship	FAIR Data, Workflows, and Research		40M
purlGTN:T00434	Hands-on	Persistent Identifiers fairdmpdata stewardship	FAIR Data, Workflows, and Research		30M
purlGTN:T00466	Hands-on	DataPLANT ARCs plantsfairdata stewardship	FAIR Data, Workflows, and Research		2H
purlGTN:T00342	Hands-on	Submitting workflows to LifeMonitor ro-crate	FAIR Data, Workflows, and Research		30M
purlGTN:T00430	Hands-on	Access fairdmpdata stewardship	FAIR Data, Workflows, and Research		50M
purlGTN:T00361	Hands-on	REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data fairdata managementbioimaging	FAIR Data, Workflows, and Research		15m
purlGTN:T00435	Hands-on	FAIRification of an RNAseq dataset fairdmpdata stewardship	FAIR Data, Workflows, and Research		1H
purlGTN:T00453	Hands-on	Assembly of the mitochondrial genome from PacBio HiFi reads	Assembly		1H
purlGTN:T00355	Hands-on	ERGA post-assembly QC plantsanimalsgenomeassemblyQC	Assembly		3H
purlGTN:T00452	Hands-on	Decontamination of a genome assembly	Assembly		1H30M
purlGTN:T00037	Hands-on	Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data) nanoporeassemblyamrmicrogalaxy	Assembly	Introductory	2h
purlGTN:T00040	Hands-on	Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data pacbioeukaryoteVGP	Assembly	Intermediate	2h
purlGTN:T00030	Hands-on	Chloroplast genome assembly plantsnanoporejbrowse1	Assembly		2h
purlGTN:T00039	Hands-on	Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step pacbioeukaryoteVGP	Assembly	Intermediate	5h
purlGTN:T00036	Hands-on	Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data illuminaassemblymicrogalaxy	Assembly		2h
purlGTN:T00029	Hands-on	Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads covid19	Assembly	Intermediate	4h
purlGTN:T00032	Hands-on	Making sense of a newly assembled genome gmodprokaryotemicrogalaxyjbrowse1	Assembly		4h
purlGTN:T00028	Hands-on	Genome Assembly Quality Control assemblyquality control	Assembly	Intermediate	2h
purlGTN:T00033	Hands-on	Genome assembly using PacBio data assemblypacbio	Assembly	Intermediate	6h
purlGTN:T00031	Hands-on	De Bruijn Graph Assembly	Assembly	Introductory	2h
purlGTN:T00038	Hands-on	Unicycler Assembly prokaryotemicrogalaxy	Assembly	Introductory	4h
purlGTN:T00034	Hands-on	An Introduction to Genome Assembly	Assembly	Introductory	30m
purlGTN:T00331	Hands-on	Large genome assembly and polishing assemblypolishingnanoporeplants	Assembly		2h
purlGTN:T00273	Hands-on	Designing plasmids encoding predicted pathways by using the BASIC assembly method	Synthetic Biology		15M
purlGTN:T00274	Hands-on	Evaluating and ranking a set of pathways based on multiple metrics	Synthetic Biology		20M
purlGTN:T00275	Hands-on	Generating theoretical possible pathways for the production of Lycopene in E.Coli using Retrosynthesis tools	Synthetic Biology		30M
purlGTN:T00486	Hands-on	Setting up a dev Onedata instance storage	Development in Galaxy	Introductory	20m
purlGTN:T00116	Hands-on	Galaxy Interactive Tools	Development in Galaxy		3h
purlGTN:T00118	Hands-on	ToolFactory: Generating Tools From Simple Scripts	Development in Galaxy		1H
purlGTN:T00117	Hands-on	Creating Galaxy tools from Conda Through Deployment	Development in Galaxy		3H
purlGTN:T00114	Hands-on	Data source integration	Development in Galaxy		10M
purlGTN:T00119	Hands-on	ToolFactory: Generating Tools From More Complex Scripts	Development in Galaxy		1H
purlGTN:T00113	Hands-on	Contributing a New Feature to Galaxy Core	Development in Galaxy		3H
purlGTN:T00111	Hands-on	Scripting Galaxy using the API and BioBlend jupyter-notebook	Development in Galaxy	Introductory	2h
purlGTN:T00123	Hands-on	Writing Automated Tests for Galaxy	Development in Galaxy		3h
purlGTN:T00122	Hands-on	Galaxy Webhooks	Development in Galaxy		1h
purlGTN:T00120	Hands-on	JavaScript plugins	Development in Galaxy		1h
purlGTN:T00115	Hands-on	Debugging Galaxy	Development in Galaxy		4h
purlGTN:T00121	Hands-on	Generic plugins	Development in Galaxy		90m
purlGTN:T00112	Hands-on	Contributing to BioBlend as a developer	Development in Galaxy		3h
purlGTN:T00421	Hands-on	Adding and updating best practice metadata for Galaxy tools using the bio.tools registry	Development in Galaxy	Introductory	1H
purlGTN:T00230	Hands-on	Peptide and Protein Quantification via Stable Isotope Labelling (SIL) DDASILAC	Proteomics	Advanced	1h
purlGTN:T00502	Hands-on	Single Cell Proteomics data analysis with bioconductor-scp	Proteomics		3H
purlGTN:T00510	Hands-on	Neoantigen 7: IEDB binding PepQuery Validated Neopeptides label-free	Proteomics		3H
purlGTN:T00225	Hands-on	Machine Learning Modeling of Anticancer Peptides MLcancer	Proteomics	Intermediate	30m
purlGTN:T00233	Hands-on	Proteogenomics 3: Novel peptide analysis proteogenomics	Proteomics	Intermediate	30m
purlGTN:T00416	Hands-on	Clinical Metaproteomics 4: Quantitation label-TMT11	Proteomics		3H
purlGTN:T00509	Hands-on	Neoantigen 6: Predicting HLA Binding label-free	Proteomics		3H
purlGTN:T00505	Hands-on	Neoantigen 2: Non-Reference-Database-Generation label-free	Proteomics		3H
purlGTN:T00210	Hands-on	Statistical analysis of DIA data DIA	Proteomics	Intermediate	1H
purlGTN:T00220	Hands-on	MaxQuant and MSstats for the analysis of TMT data DDATMT	Proteomics		3H
purlGTN:T00217	Hands-on	Mass spectrometry imaging: Loading and exploring MSI data mouseimaging	Proteomics	Introductory	45m
purlGTN:T00228	Hands-on	Peptide and Protein ID using OpenMS tools DDAHeLa	Proteomics	Advanced	45m
purlGTN:T00414	Hands-on	Clinical Metaproteomics 2: Discovery label-TMT11	Proteomics		3H
purlGTN:T00504	Hands-on	Neoantigen 1: Fusion-Database-Generation label-free	Proteomics		2H
purlGTN:T00503	Hands-on	Multiomics data analysis using MultiGSEA multi-omicstranscriptomicsproteomicsmetabolomics	Proteomics		1H
purlGTN:T00507	Hands-on	Neoantigen 4: PepQuery2 Verification label-free	Proteomics		3H
purlGTN:T00506	Hands-on	Neoantigen 3: Database merge and FragPipe discovery label-free	Proteomics		3H
purlGTN:T00226	Hands-on	Detection and quantitation of N-termini (degradomics) via N-TAILS	Proteomics	Intermediate	1h
purlGTN:T00216	Hands-on	Label-free versus Labelled - How to Choose Your Quantitation Method DDA	Proteomics	Introductory	15m
purlGTN:T00413	Hands-on	Clinical Metaproteomics 1: Database-Generation label-TMT11	Proteomics		3H
purlGTN:T00234	Hands-on	Annotating a protein list identified by LC-MS/MS experiments DDAhuman	Proteomics		1H
purlGTN:T00227	Hands-on	Peptide Library Data Analysis	Proteomics	Intermediate	20m
purlGTN:T00222	Hands-on	metaQuantome 1: Data creation microgalaxy	Proteomics	Intermediate	1h
purlGTN:T00214	Hands-on	Protein FASTA Database Handling DDA	Proteomics	Introductory	30m
purlGTN:T00508	Hands-on	Neoantigen 5: Variant Annotation label-free	Proteomics		3H
purlGTN:T00218	Hands-on	Label-free data analysis using MaxQuant DDAlabel-free	Proteomics	Introductory	1H
purlGTN:T00235	Hands-on	Secretome Prediction humanwork-in-progress	Proteomics	Intermediate	30m
purlGTN:T00417	Hands-on	Clinical Metaproteomics 5: Data Interpretation label-TMT11	Proteomics		3H
purlGTN:T00415	Hands-on	Clinical Metaproteomics 3: Verification label-TMT11	Proteomics		3H
purlGTN:T00224	Hands-on	metaQuantome 3: Taxonomy microgalaxy	Proteomics	Intermediate	1h
purlGTN:T00219	Hands-on	MaxQuant and MSstats for the analysis of label-free data label-free	Proteomics	Intermediate	2H
purlGTN:T00213	Hands-on	Biomarker candidate identification DDAhuman	Proteomics		3H
purlGTN:T00212	Hands-on	Library Generation for DIA Analysis DIA	Proteomics	Intermediate	1H
purlGTN:T00232	Hands-on	Proteogenomics 2: Database Search proteogenomics	Proteomics	Intermediate	15m
purlGTN:T00229	Hands-on	Peptide and Protein ID using SearchGUI and PeptideShaker DDAHeLa	Proteomics	Introductory	45m
purlGTN:T00215	Hands-on	EncyclopeDIA DIA	Proteomics		6H
purlGTN:T00211	Hands-on	DIA Analysis using OpenSwathWorkflow DIA	Proteomics	Intermediate	2H
purlGTN:T00221	Hands-on	Metaproteomics tutorial microgalaxy	Proteomics		2h
purlGTN:T00231	Hands-on	Proteogenomics 1: Database Creation proteogenomics	Proteomics	Intermediate	30m
purlGTN:T00223	Hands-on	metaQuantome 2: Function microgalaxy	Proteomics	Intermediate	1h
purlGTN:T00161	Hands-on	Rule Based Uploader: Advanced collectionstags	Using Galaxy and Managing your Data	Advanced	20m
purlGTN:T00147	Hands-on	Downloading and Deleting Data in Galaxy	Using Galaxy and Managing your Data	Introductory	20M
purlGTN:T00158	Hands-on	Searching Your History	Using Galaxy and Managing your Data	Introductory	5m
purlGTN:T00148	Hands-on	Use Jupyter notebooks in Galaxy	Using Galaxy and Managing your Data		1H
purlGTN:T00157	Hands-on	RStudio in Galaxy interactive-tools	Using Galaxy and Managing your Data		3H
purlGTN:T00163	Hands-on	Creating, Editing and Importing Galaxy Workflows workflows	Using Galaxy and Managing your Data	Intermediate	30m
purlGTN:T00152	Hands-on	InterMine integration with Galaxy gmodintermine	Using Galaxy and Managing your Data		1h
purlGTN:T00164	Hands-on	Using Workflow Parameters workflows	Using Galaxy and Managing your Data	Intermediate	30m
purlGTN:T00155	Hands-on	SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis ncbicovid19	Using Galaxy and Managing your Data		30m
purlGTN:T00492	Hands-on	Exporting to Onedata remote storage	Using Galaxy and Managing your Data	Introductory	5m
purlGTN:T00146	Hands-on	Using dataset collections collections	Using Galaxy and Managing your Data	Intermediate	30m
purlGTN:T00405	Hands-on	Creating high resolution images of Galaxy Workflows workflows	Using Galaxy and Managing your Data	Introductory	30M
purlGTN:T00165	Hands-on	Workflow Reports workflows	Using Galaxy and Managing your Data	Intermediate	30m
purlGTN:T00493	Hands-on	Importing (uploading) data from Onedata storage	Using Galaxy and Managing your Data	Introductory	15m
purlGTN:T00490	Hands-on	Onedata user-owned storage storage	Using Galaxy and Managing your Data	Introductory	15m
purlGTN:T00491	Hands-on	Getting started with Onedata distributed storage storage	Using Galaxy and Managing your Data	Introductory	20m
purlGTN:T00154	Hands-on	Name tags for following complex histories	Using Galaxy and Managing your Data		20m
purlGTN:T00153	Hands-on	JupyterLab in Galaxy interactive-tools	Using Galaxy and Managing your Data		1H
purlGTN:T00159	Hands-on	Submitting sequence data to ENA covid19	Using Galaxy and Managing your Data	Intermediate	1h
purlGTN:T00150	Hands-on	Understanding Galaxy history system	Using Galaxy and Managing your Data	Introductory	30m
purlGTN:T00160	Hands-on	Rule Based Uploader collectionstags	Using Galaxy and Managing your Data	Intermediate	20m
purlGTN:T00151	Hands-on	Extracting Workflows from Histories workflows	Using Galaxy and Managing your Data		30m
purlGTN:T00149	Hands-on	Group tags for complex experimental designs	Using Galaxy and Managing your Data		10m
purlGTN:T00162	Hands-on	Automating Galaxy workflows using the command line workflowsvariant-analysiscovid19	Using Galaxy and Managing your Data		2h
purlGTN:T00282	Hands-on	Motivation and Demotivation elixirtrain-the-trainers	Teaching and Hosting Galaxy training		60m
purlGTN:T00285	Hands-on	Set up a Galaxy for Training	Teaching and Hosting Galaxy training		2h
purlGTN:T00286	Hands-on	Training Infrastructure as a Service cyoa	Teaching and Hosting Galaxy training		10m
purlGTN:T00280	Hands-on	Training techniques to enhance learner participation and engagement elixirtrain-the-trainers	Teaching and Hosting Galaxy training		60m
purlGTN:T00277	Hands-on	Teaching experiences	Teaching and Hosting Galaxy training		1h
purlGTN:T00276	Hands-on	Assessment and feedback in training and teachings elixirtrain-the-trainers	Teaching and Hosting Galaxy training		3h30m
purlGTN:T00372	Hands-on	Course Builder cyoa	Teaching and Hosting Galaxy training		10m
purlGTN:T00278	Hands-on	Galaxy Admin Training	Teaching and Hosting Galaxy training	Advanced	60m
purlGTN:T00281	Hands-on	Live Coding is a Skill	Teaching and Hosting Galaxy training		1h
purlGTN:T00371	Hands-on	Asynchronous training	Teaching and Hosting Galaxy training		1h
purlGTN:T00284	Hands-on	Running a workshop as instructor	Teaching and Hosting Galaxy training		3H
purlGTN:T00287	Hands-on	Teaching online	Teaching and Hosting Galaxy training		1h
purlGTN:T00283	Hands-on	Organizing a workshop	Teaching and Hosting Galaxy training		3H
purlGTN:T00354	Hands-on	Train-the-Trainer: putting it all together elixirtrain-the-trainers	Teaching and Hosting Galaxy training		60m
purlGTN:T00279	Hands-on	Hybrid training	Teaching and Hosting Galaxy training		1h
purlGTN:T00402	Hands-on	Finding the muon stopping site with pymuon-suite in Galaxy	Materials Science	Introductory	1H
purlGTN:T00144	Hands-on	Tree thinking for tuberculosis evolution and epidemiology prokaryoteone-healthphylogeneticsmicrogalaxy	Evolution	Introductory	1H
purlGTN:T00440	Hands-on	Phylogenetics - Back to basics phylogeneticsevolution	Evolution	Intermediate	4H
purlGTN:T00145	Hands-on	Identifying tuberculosis transmission links: from SNPs to transmission clusters prokaryoteone-healthmicrogalaxy	Evolution	Intermediate	2H
purlGTN:T00489	Hands-on	Phylogenetic analysis for bacterial comparative genomics microgalaxywork-in-progress	Evolution	Introductory	1H
purlGTN:T00010	Hands-on	Galaxy Interactive Tools ansibleinteractive-tools	Galaxy Server administration		2h
purlGTN:T00026	Hands-on	Deploying Wireguard for private mesh networking wireguardnetworking	Galaxy Server administration		60m
purlGTN:T00004	Hands-on	Reference Data with CVMFS without Ansible	Galaxy Server administration		1h
purlGTN:T00024	Hands-on	Performant Uploads with TUS	Galaxy Server administration		30M
purlGTN:T00014	Hands-on	Managing Galaxy on Kubernetes kubernetes	Galaxy Server administration	Intermediate	30m
purlGTN:T00324	Hands-on	Server Maintenance: Cleanup, Backup, and Restoration ansibledeployinggit-gat	Galaxy Server administration		30m
purlGTN:T00329	Hands-on	Reference Data with Data Managers	Galaxy Server administration		1h
purlGTN:T00008	Hands-on	Enable upload via FTP datagit-gat	Galaxy Server administration		1h
purlGTN:T00009	Hands-on	Galaxy Monitoring with gxadmin monitoringansiblegit-gat	Galaxy Server administration		30m
purlGTN:T00007	Hands-on	External Authentication authentication	Galaxy Server administration		30m
purlGTN:T00529	Hands-on	Adding file-sources to Galaxy earth-systemoceandatawork-in-progress	Galaxy Server administration		15m
purlGTN:T00480	Hands-on	Pulsar usage on SURF Research Cloud deploying	Galaxy Server administration	Introductory	30m
purlGTN:T00327	Hands-on	Customizing the look of Galaxy git-gat	Galaxy Server administration		45m
purlGTN:T00018	Hands-on	Galaxy Monitoring with Reports ansiblemonitoringgit-gatbroken	Galaxy Server administration		30m
purlGTN:T00020	Hands-on	How I learned to stop worrying and love the systemd ansiblesystemd	Galaxy Server administration		30m
purlGTN:T00013	Hands-on	Galaxy Installation on Kubernetes kubernetes	Galaxy Server administration	Intermediate	30m
purlGTN:T00001	Hands-on	Galaxy Installation with Ansible ansibledeployinggit-gat	Galaxy Server administration		2h30m
purlGTN:T00025	Hands-on	Upgrading Galaxy ansible	Galaxy Server administration		1h
purlGTN:T00012	Hands-on	Mapping Jobs to Destinations using TPV jobsgit-gat	Galaxy Server administration		2h
purlGTN:T00011	Hands-on	Automation with Jenkins ansibleautomation	Galaxy Server administration		1h
purlGTN:T00003	Hands-on	Reference Data with CVMFS ansiblegit-gat	Galaxy Server administration		1h
purlGTN:T00328	Hands-on	Customizing the look of Galaxy (Manual)	Galaxy Server administration		45m
purlGTN:T00330	Hands-on	Monitoring Galaxy and Pulsar with Sentry ansiblegit-gat	Galaxy Server administration		1h
purlGTN:T00021	Hands-on	Deploying a compute cluster in OpenStack via Terraform terraformdeployingcloud	Galaxy Server administration		60m
purlGTN:T00016	Hands-on	Distributed Object Storage ansiblestorage	Galaxy Server administration		30m
purlGTN:T00478	Hands-on	Configuring the Onedata connectors (remotes, Object Store, BYOS, BYOD) storage	Galaxy Server administration	Intermediate	40m
purlGTN:T00015	Hands-on	Galaxy Monitoring with Telegraf and Grafana ansiblemonitoringgit-gat	Galaxy Server administration		2h
purlGTN:T00006	Hands-on	Galaxy Database schema	Galaxy Server administration		2h
purlGTN:T00323	Hands-on	Use Apptainer containers for running Galaxy jobs jobsansiblegit-gat	Galaxy Server administration		1h
purlGTN:T00468	Hands-on	Alternative Celery Deployment for Galaxy ansible	Galaxy Server administration		1h
purlGTN:T00005	Hands-on	Data Libraries ansiblestoragegit-gat	Galaxy Server administration		30m
purlGTN:T00027	Hands-on	Deploying Tailscale/Headscale for private mesh networking wireguardnetworking	Galaxy Server administration		60m
purlGTN:T00023	Hands-on	Galaxy Tool Management with Ephemeris toolsgit-gat	Galaxy Server administration		45m
purlGTN:T00002	Hands-on	Connecting Galaxy to a compute cluster jobsansiblegit-gat	Galaxy Server administration		1h
purlGTN:T00473	Hands-on	Create a subdomain for your community on UseGalaxy.eu subdomaincommunityearth-systeminteractive-tools	Galaxy Server administration		1H
purlGTN:T00325	Hands-on	Deploying a Beacon v1 in Galaxy ga4ghbeacongit-gat	Galaxy Server administration		30m
purlGTN:T00022	Hands-on	Training Infrastructure as a Service (TIaaS) ansibletrainingjobsgit-gat	Galaxy Server administration		30m
purlGTN:T00479	Hands-on	Galaxy usage on SURF Research Cloud deploying	Galaxy Server administration	Introductory	30m
purlGTN:T00000	Hands-on	Ansible ansible	Galaxy Server administration		60m
purlGTN:T00017	Hands-on	Running Jobs on Remote Resources with Pulsar ansiblejobsgit-gat	Galaxy Server administration		60m
purlGTN:T00326	Hands-on	Setting up Celery Workers for Galaxy ansiblegit-gat	Galaxy Server administration		1h
purlGTN:T00398	Hands-on	Introduction to sequencing with Python (part two) jupyter-notebook	Foundations of Data Science		1h
purlGTN:T00419	Hands-on	Data manipulation with Pandas jupyter-notebook	Foundations of Data Science		1h
purlGTN:T00073	Hands-on	Variant Calling Workflow	Foundations of Data Science		50M
purlGTN:T00074	Hands-on	Advanced CLI in Galaxy bashjupyter-notebook	Foundations of Data Science	Intermediate	2H
purlGTN:T00083	Hands-on	Introduction to Python jupyter-notebook	Foundations of Data Science	Introductory	5H
purlGTN:T00097	Hands-on	Python - Subprocess jupyter-notebook	Foundations of Data Science	Intermediate	45M
purlGTN:T00485	Hands-on	Python - Warm-up for statistics and machine learning elixirai-mlwork-in-progressjupyter-notebook	Foundations of Data Science	Introductory	1H
purlGTN:T00360	Hands-on	One protein along the UniProt page	Foundations of Data Science	Introductory	1H
purlGTN:T00110	Hands-on	SQL with R SQLRrmarkdown-notebookjupyter-notebook	Foundations of Data Science	Intermediate	45M
purlGTN:T00104	Hands-on	dplyr & tidyverse for data processing Rrmarkdown-notebookjupyter-notebook	Foundations of Data Science	Advanced	1H
purlGTN:T00098	Hands-on	Python - Testing jupyter-notebook	Foundations of Data Science	Intermediate	45M
purlGTN:T00093	Hands-on	Python - Loops jupyter-notebook	Foundations of Data Science	Introductory	40M
purlGTN:T00081	Hands-on	Advanced Python jupyter-notebook	Foundations of Data Science	Intermediate	3H
purlGTN:T00382	Hands-on	A (very) brief history of genomics	Foundations of Data Science		1h
purlGTN:T00109	Hands-on	SQL with Python SQLPythonjupyter-notebook	Foundations of Data Science	Intermediate	45M
purlGTN:T00411	Hands-on	Introduction to sequencing with Python (part four) jupyter-notebook	Foundations of Data Science		1h
purlGTN:T00095	Hands-on	Python - Multiprocessing jupyter-notebook	Foundations of Data Science	Advanced	30M
purlGTN:T00092	Hands-on	Python - Coding Style jupyter-notebook	Foundations of Data Science	Intermediate	30M
purlGTN:T00076	Hands-on	CLI basics bashjupyter-notebook	Foundations of Data Science	Introductory	1H
purlGTN:T00086	Hands-on	Python - Try & Except jupyter-notebook	Foundations of Data Science	Introductory	20M
purlGTN:T00359	Hands-on	Learning about one gene across biological resources and formats	Foundations of Data Science	Introductory	1H
purlGTN:T00072	Hands-on	Version Control with Git	Foundations of Data Science		65M
purlGTN:T00353	Hands-on	Data visualisation Olympics - Visualization in R cyoaRrmarkdown-notebookjupyter-notebook	Foundations of Data Science	Introductory	1h
purlGTN:T00087	Hands-on	Python - Files & CSV jupyter-notebook	Foundations of Data Science	Introductory	1H30M
purlGTN:T00089	Hands-on	Python - Functions jupyter-notebook	Foundations of Data Science	Introductory	30M
purlGTN:T00101	Hands-on	Virtual Environments For Software Development jupyter-notebook	Foundations of Data Science	Intermediate	30M
purlGTN:T00425	Hands-on	Versioning your code and data with git	Foundations of Data Science		1h
purlGTN:T00096	Hands-on	Plotting in Python jupyter-notebook	Foundations of Data Science	Intermediate	1H
purlGTN:T00106	Hands-on	Advanced SQL SQLjupyter-notebook	Foundations of Data Science	Introductory	3H
purlGTN:T00108	Hands-on	SQL Educational Game - Murder Mystery gameSQLjupyter-notebook	Foundations of Data Science	Intermediate	2H
purlGTN:T00091	Hands-on	Python - Lists & Strings & Dictionaries jupyter-notebook	Foundations of Data Science	Introductory	1H
purlGTN:T00102	Hands-on	Advanced R in Galaxy R	Foundations of Data Science	Intermediate	2H
purlGTN:T00094	Hands-on	Python - Math jupyter-notebook	Foundations of Data Science	Introductory	30M
purlGTN:T00103	Hands-on	R basics in Galaxy interactive-toolsR	Foundations of Data Science	Introductory	3H
purlGTN:T00100	Hands-on	Python - Type annotations jupyter-notebook	Foundations of Data Science	Intermediate	30M
purlGTN:T00105	Hands-on	Make & Snakemake	Foundations of Data Science	Intermediate	3H
purlGTN:T00099	Hands-on	Python - Basic Types & Type Conversion jupyter-notebook	Foundations of Data Science	Introductory	30M
purlGTN:T00352	Hands-on	Data Manipulation Olympics - JQ cyoajson	Foundations of Data Science	Introductory	1h
purlGTN:T00078	Hands-on	Data Manipulation Olympics - SQL cyoasqljupyter-notebook	Foundations of Data Science	Introductory	1h
purlGTN:T00404	Hands-on	Introduction to sequencing with Python (part three) jupyter-notebook	Foundations of Data Science		1h
purlGTN:T00075	Hands-on	CLI Educational Game - Bashcrawl gamebashjupyter-notebook	Foundations of Data Science	Intermediate	2H
purlGTN:T00397	Hands-on	Introduction to sequencing with Python (part one) jupyter-notebook	Foundations of Data Science		1h
purlGTN:T00079	Hands-on	Basics of using Git from the Command Line	Foundations of Data Science		30m
purlGTN:T00082	Hands-on	Python - Argparse	Foundations of Data Science	Intermediate	30M
purlGTN:T00107	Hands-on	Introduction to SQL SQLjupyter-notebook	Foundations of Data Science	Introductory	3H
purlGTN:T00085	Hands-on	Conda Environments For Software Development condajupyter-notebook	Foundations of Data Science	Intermediate	30M
purlGTN:T00084	Hands-on	Python - Introductory Graduation jupyter-notebook	Foundations of Data Science	Introductory	1H30M
purlGTN:T00090	Hands-on	Python - Globbing jupyter-notebook	Foundations of Data Science	Intermediate	15M
purlGTN:T00088	Hands-on	Python - Flow Control jupyter-notebook	Foundations of Data Science	Introductory	40M
purlGTN:T00389	Hands-on	Metatranscriptomics analysis using microbiome RNA-seq data (short) metatranscriptomicsmicrogalaxy	Microbiome	Introductory	3H
purlGTN:T00388	Hands-on	Metatranscriptomics analysis using microbiome RNA-seq data metatranscriptomicsmicrogalaxy	Microbiome	Introductory	5H
purlGTN:T00386	Hands-on	Assembly of metagenomic sequencing data assemblymetagenomicsmicrogalaxy	Microbiome	Introductory	2H
purlGTN:T00385	Hands-on	Analyses of metagenomics data - The global picture microgalaxy	Microbiome		2H30M
purlGTN:T00384	Hands-on	Identification of the micro-organisms in a beer using Nanopore sequencing nanoporebeercitizen sciencemetagenomicsmicrogalaxy	Microbiome	Introductory	1H
purlGTN:T00459	Hands-on	Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2 fungiecology	Microbiome		3H
purlGTN:T00427	Hands-on	QIIME 2 Moving Pictures metagenomicstaxonomic profilingdiversitymicrogalaxy	Microbiome		10H
purlGTN:T00390	Hands-on	16S Microbial Analysis with mothur (extended) metabarcoding16Smicrogalaxy	Microbiome		6h
purlGTN:T00441	Hands-on	Building an amplicon sequence variant (ASV) table from 16S data using DADA2 metabarcoding16Smicrogalaxy	Microbiome		3H
purlGTN:T00394	Hands-on	Antibiotic resistance detection nanoporeplasmidsassemblyamrmicrogalaxy	Microbiome		3h
purlGTN:T00447	Hands-on	Calculating α and β diversity from microbiome taxonomic data metagenomicsdiversity	Microbiome	Introductory	20M
purlGTN:T00392	Hands-on	16S Microbial analysis with Nanopore data metabarcoding16Snanoporemicrogalaxyplants	Microbiome		2H
purlGTN:T00387	Hands-on	Binning of metagenomic sequencing data binningmetagenomicsmicrogalaxy	Microbiome	Introductory	2H
purlGTN:T00412	Hands-on	QIIME 2 Cancer Microbiome Intervention metabarcoding16Staxonomic profilingdiversitymicrogalaxy	Microbiome		10H
purlGTN:T00501	Hands-on	Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data	Microbiome	Introductory	1H
purlGTN:T00391	Hands-on	16S Microbial Analysis with mothur (short) metabarcoding16Smicrogalaxy	Microbiome		2h
purlGTN:T00395	Hands-on	Taxonomic Profiling and Visualization of Metagenomic Data metagenomicstaxonomic profilingmicrogalaxy	Microbiome	Introductory	2H
purlGTN:T00393	Hands-on	Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition microgalaxyNanopore data analysisPathogens detectionPhylogenetic treeHeatmapcyoa	Microbiome	Introductory	4h
purlGTN:T00528	Hands-on	Deciphering Virus Populations - Single Nucleotide Variants (SNVs) and Specificities in Baculovirus Isolates	Variant Analysis	Intermediate	3H
purlGTN:T00314	Hands-on	Calling variants in non-diploid systems prokaryotemicrogalaxy	Variant Analysis		1h30m
purlGTN:T00316	Hands-on	Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data covid19virologyone-health	Variant Analysis	Intermediate	3H
purlGTN:T00315	Hands-on	From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis covid19virologyone-health	Variant Analysis		1H
purlGTN:T00308	Hands-on	Avian influenza viral strain analysis from gene segment sequencing data virologyone-health	Variant Analysis	Intermediate	4H
purlGTN:T00317	Hands-on	Somatic Variant Discovery from WES Data Using Control-FREEC	Variant Analysis		3H
purlGTN:T00319	Hands-on	M. tuberculosis Variant Analysis prokaryoteone-healthmicrogalaxytuberculosis	Variant Analysis	Intermediate	2h
purlGTN:T00448	Hands-on	Querying the University of Bradford GDC Beacon Database for Copy Number Variants (CNVs)	Variant Analysis	Introductory	30M
purlGTN:T00309	Hands-on	Calling variants in diploid systems	Variant Analysis		3h
purlGTN:T00320	Hands-on	Trio Analysis using Synthetic Datasets from RD-Connect GPAP cyoa	Variant Analysis	Advanced	2H
purlGTN:T00318	Hands-on	Identification of somatic and germline variants from tumor and normal sample pairs	Variant Analysis		7h
purlGTN:T00449	Hands-on	Working with Beacon V2: A Comprehensive Guide to Creating, Uploading, and Searching for Variants with Beacons	Variant Analysis	Advanced	2H
purlGTN:T00312	Hands-on	Mapping and molecular identification of phenotype-causing mutations	Variant Analysis		2h
purlGTN:T00310	Hands-on	Calling very rare variants	Variant Analysis		3h
purlGTN:T00347	Hands-on	Pox virus genome analysis from tiled-amplicon sequencing data virologyone-health	Variant Analysis	Advanced	4H
purlGTN:T00311	Hands-on	Exome sequencing data analysis for diagnosing a genetic disease	Variant Analysis		5h
purlGTN:T00313	Hands-on	Microbial Variant Calling prokaryotemicrogalaxygmodjbrowse1	Variant Analysis		45m
purlGTN:T00245	Hands-on	Generating a single cell matrix using Alevin paper-replicationMIGHTS	Single Cell		2H
purlGTN:T00249	Hands-on	Inferring single cell trajectories with Monocle3 paper-replicationMIGHTS	Single Cell		2H
purlGTN:T00445	Hands-on	Single-cell ATAC-seq standard processing with SnapATAC2 10xepigeneticssingle-cell	Single Cell	Intermediate	4H
purlGTN:T00378	Hands-on	Generating a single cell matrix using Alevin and combining datasets (bash + R) 10xpaper-replicationMIGHTSjupyter-notebook	Single Cell		2H
purlGTN:T00256	Hands-on	Understanding Barcodes	Single Cell		2h
purlGTN:T00357	Hands-on	Scanpy Parameter Iterator	Single Cell		2H
purlGTN:T00438	Hands-on	Filter, plot, and explore single cell RNA-seq data with Seurat paper-replicationMIGHTS	Single Cell		3H
purlGTN:T00514	Hands-on	Pseudobulk Analysis with Decoupler and EdgeR transcriptomicspseudobulk	Single Cell		4H
purlGTN:T00255	Hands-on	Single-cell quality control with scater work-in-progress	Single Cell		1H
purlGTN:T00251	Hands-on	Pre-processing of Single-Cell RNA Data work-in-progress	Single Cell		3h
purlGTN:T00254	Hands-on	Clustering 3K PBMCs with Scanpy 10x	Single Cell		8H
purlGTN:T00247	Hands-on	Filter, plot and explore single-cell RNA-seq data with Scanpy paper-replicationMIGHTS	Single Cell		3H
purlGTN:T00379	Hands-on	Inferring single cell trajectories with Scanpy paper-replicationMIGHTS	Single Cell		3H
purlGTN:T00513	Hands-on	Evaluating Reference Data for Bulk RNA Deconvolution transcriptomics	Single Cell		2H
purlGTN:T00242	Hands-on	Bulk matrix to ESet \| Creating the bulk RNA-seq dataset for deconvolution transcriptomicsdata management	Single Cell		1H
purlGTN:T00336	Hands-on	Inferring single cell trajectories with Monocle3 (R) paper-replicationMIGHTSrmarkdown-notebookjupyter-notebook	Single Cell		3H
purlGTN:T00244	Hands-on	Inferring single cell trajectories with Scanpy (Python) paper-replicationMIGHTSjupyter-notebook	Single Cell		2H
purlGTN:T00374	Hands-on	Importing files from public atlases data importdata management	Single Cell		15m
purlGTN:T00240	Hands-on	Bulk RNA Deconvolution with MuSiC transcriptomics	Single Cell		2h
purlGTN:T00243	Hands-on	Comparing inferred cell compositions using MuSiC deconvolution transcriptomics	Single Cell		1H
purlGTN:T00246	Hands-on	Combining single cell datasets after pre-processing paper-replicationMIGHTS	Single Cell		1H
purlGTN:T00366	Hands-on	Filter, plot, and explore single cell RNA-seq data with Seurat (R) paper-replicationMIGHTSrmarkdown-notebookjupyter-notebook	Single Cell		3H
purlGTN:T00335	Hands-on	Pre-processing of 10X Single-Cell ATAC-seq Datasets 10xepigenetics	Single Cell		1h
purlGTN:T00380	Hands-on	Converting NCBI Data to the AnnData Format data managementdata import	Single Cell		1H
purlGTN:T00248	Hands-on	Removing the effects of the cell cycle	Single Cell		1H
purlGTN:T00250	Hands-on	Analysis of plant scRNA-Seq Data with Scanpy plantspaper-replication	Single Cell		2H
purlGTN:T00241	Hands-on	Matrix Exchange Format to ESet \| Creating a single-cell RNA-seq reference dataset for deconvolution data management	Single Cell		1H
purlGTN:T00456	Hands-on	GO Enrichment Analysis on Single-Cell RNA-Seq Data single cellGO enrichment	Single Cell		3H
purlGTN:T00515	Hands-on	Multi-sample batch correction with Harmony and SnapATAC2 10xepigenetics	Single Cell	Intermediate	4H
purlGTN:T00358	Hands-on	Filter, plot and explore single-cell RNA-seq data with Scanpy (Python) paper-replicationMIGHTSjupyter-notebook	Single Cell		3H
purlGTN:T00253	Hands-on	Downstream Single-cell RNA analysis with RaceID work-in-progress	Single Cell		3H
purlGTN:T00252	Hands-on	Pre-processing of 10X Single-Cell RNA Datasets 10x	Single Cell		1h
purlGTN:T00418	Hands-on	Converting between common single cell data formats data managementdata import	Single Cell		1H
purlGTN:T00516	Hands-on	Clustering 3K PBMCs with Seurat 10x	Single Cell	Introductory	8H
purlGTN:T00487	Hands-on	Data submission using ENA upload Tool	Ecology		2h
purlGTN:T00124	Hands-on	Metabarcoding/eDNA through Obitools Genetic composition EBV classCommunity composition EBV classEBV datasetEBV workfloweDNAMetabarcoding	Ecology		1H
purlGTN:T00450	Hands-on	Marine Omics identifying biosynthetic gene clusters earth-systemoceanmarine omics	Ecology		3H
purlGTN:T00367	Hands-on	QGIS Web Feature Services earth-systemGISGeographical Information SystemWFSSpatial dataMapsOGC	Ecology		0H30M
purlGTN:T00130	Hands-on	RAD-Seq to construct genetic maps RAD-seqGenetic composition EBV classEBV datasetEBV workflow	Ecology		8h
purlGTN:T00128	Hands-on	RAD-Seq de-novo data analysis RAD-seqGenetic composition EBV classSpecies populations EBV classEBV datasetEBV workflow	Ecology		8h
purlGTN:T00400	Hands-on	From NDVI data with OpenEO to time series visualisation with Holoviews earth-systemland degradationNDVIcopernicusholoviews	Ecology		1H
purlGTN:T00126	Hands-on	Biodiversity data exploration taxonomic datadata quality	Ecology		1H
purlGTN:T00125	Hands-on	Compute and analyze biodiversity metrics with PAMPA toolsuite Species population EBV classCommunity composition EBV classEBV datasetEBV workflowmodeling	Ecology		2H
purlGTN:T00423	Hands-on	Checking expected species and contamination in bacterial isolate illuminabacteriamicrogalaxy	Ecology	Introductory	1H
purlGTN:T00332	Hands-on	Obis marine indicators earth-systemoceanmarine omicsbiodiversity	Ecology		1H
purlGTN:T00333	Hands-on	Sentinel 2 biodiversity Remote sensing	Ecology		48H
purlGTN:T00488	Hands-on	Cleaning GBIF data using OpenRefine	Ecology		0h45m
purlGTN:T00135	Hands-on	Species distribution modeling interactive-toolsmodelinggbifspecies populations EBV class	Ecology		1h
purlGTN:T00131	Hands-on	Visualize EBV cube data with Panoply netCDF viewer interactive-toolsEBV cubeData visualization	Ecology		1H
purlGTN:T00132	Hands-on	Preparing genomic data for phylogeny reconstruction phylogenydata handlingfunctional annotation	Ecology		3H
purlGTN:T00136	Hands-on	Visualization of Climate Data using NetCDF xarray Map Plotting pangeo	Ecology	Introductory	1H
purlGTN:T00134	Hands-on	Regional GAM Species populations EBV classSpecies traits EBV classEBV datasetEBV workflow	Ecology		2h30m
purlGTN:T00422	Hands-on	Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities MetadataEMLEcologyBiodiversityFAIRData Paper	Ecology		30M
purlGTN:T00399	Hands-on	Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS MetadataEMLFAIRData Paper	Ecology		30M
purlGTN:T00455	Hands-on	Ecoregionalization workflow tutorial ecologytaxonomic dataEBV workflowmodelinggbifoceanearth-systeminteractive-tools	Ecology		2H
purlGTN:T00127	Hands-on	Champs blocs indicators Ecosystem EBV classEBV datasetEBV workflowMarine ecosystems	Ecology		1H
purlGTN:T00133	Hands-on	RAD-Seq Reference-based data analysis RAD-seqGenetic composition EBV classSpecies population EBV classEBV datasetEBV workflow	Ecology		8h
purlGTN:T00129	Hands-on	Cleaning GBIF data for the use in Ecology gbifdata managementdata cleaning	Ecology		0H30M
TBA	Hands-on	Breve introducción a Galaxy - en español	Introduction to Galaxy Analyses	Introductory	30m
TBA	Hands-on	Production d'indicateurs champs de bloc	Ecology		1H
purlGTN:F00240	FAQs	How can I create a tutorial skeleton from a Galaxy workflow?	Contributing to the Galaxy Training Material
purlGTN:F00110	FAQs	Using tutorial mode	Galaxy FAQ
purlGTN:F00220	FAQs	I got slightly different numbers than were in the tutorial	Introduction to Galaxy Analyses
purlGTN:F00258	FAQs	UCSC import: what should my file look like?	Epigenetics
purlGTN:F00326	FAQs	The UMAP Plots errors out sometimes?	Single Cell
purlGTN:F00229	FAQs	Are UMIs not actually unique?	Single Cell
purlGTN:F00235	FAQs	Downloading the files from the NCBI server fails or takes too long.	Assembly
purlGTN:F00354	FAQs	How can I talk with other users?	Single Cell
purlGTN:F00111	FAQs	Does your account usage quota seem incorrect?	Galaxy FAQ
purlGTN:F00112	FAQs	Forgot Password	Galaxy FAQ
purlGTN:F00113	FAQs	Changing account email or password	Galaxy FAQ
purlGTN:F00230	FAQs	Why do we only consider highly variable genes?	Single Cell
purlGTN:F00388	FAQs	Can we use snippy pipeline instead for the phylogenetic analysis?	Microbiome
purlGTN:F00312	FAQs	Why do we have a variant mapping file when it is not being used in the workflow?	Proteomics
purlGTN:F00423	FAQs	Open History files in Integrated Genome Browser (IGB)	Galaxy FAQ
purlGTN:F00114	FAQs	Using IGV with Galaxy	Galaxy FAQ
purlGTN:F00231	FAQs	Add genome and annotations to IGV from Galaxy	Visualisation
purlGTN:F00232	FAQs	Add Mapped reads track to IGV from Galaxy	Visualisation
purlGTN:F00375	FAQs	Why don't we perform the V-Search dereplication step of ASaiM for metatrascriptomic data?	Microbiome
purlGTN:F00356	FAQs	What is a Learning Pathway?	GTN FAQ
purlGTN:F00454	FAQs	Posting issues and ideas for the Galaxy Community	Contributing to the Galaxy Training Material
purlGTN:F00435	FAQs	Why isn't my history updating?	Galaxy Server administration
purlGTN:F00426	FAQs	Annotating Pre-requisites	Contributing to the Galaxy Training Material
purlGTN:F00181	FAQs	Why host your materials with the GTN?	GTN FAQ
purlGTN:F00115	FAQs	Why not use Excel?	Galaxy FAQ
purlGTN:F00281	FAQs	Can EncyclopeDIA be run on a DIA-MS dataset without a spectral library?	Proteomics
purlGTN:F00389	FAQs	Can we also use this workflow on Illumina raw reads?	Microbiome
purlGTN:F00390	FAQs	Do the pipelines work with both isolates and direct from raw meat? or only isolate?	Microbiome
purlGTN:F00116	FAQs	Annotate a workflow	Galaxy FAQ
purlGTN:F00397	FAQs	Ensuring Workflows meet Best Practices	Galaxy FAQ
purlGTN:F00117	FAQs	Creating a new workflow	Galaxy FAQ
purlGTN:F00118	FAQs	Opening the workflow editor	Galaxy FAQ
purlGTN:F00136	FAQs	Extraer un flujo de trabajo de tu historial	Galaxy FAQ
purlGTN:F00119	FAQs	Extracting a workflow from your history	Galaxy FAQ
purlGTN:F00120	FAQs	Hiding intermediate steps	Galaxy FAQ
purlGTN:F00121	FAQs	Importing a workflow	Galaxy FAQ
purlGTN:F00364	FAQs	Import workflows from DockStore	Galaxy FAQ
purlGTN:F00122	FAQs	Importing a workflow using the Tool Registry Server (TRS) search	Galaxy FAQ
purlGTN:F00123	FAQs	Setting parameters at run-time	Galaxy FAQ
purlGTN:F00124	FAQs	Make a workflow public	Galaxy FAQ
purlGTN:F00125	FAQs	Renaming workflow outputs	Galaxy FAQ
purlGTN:F00126	FAQs	Viewing a workflow report	Galaxy FAQ
purlGTN:F00127	FAQs	Running a workflow	Galaxy FAQ
purlGTN:F00367	FAQs	Importing and Launching a Dockstore Workflow	Galaxy FAQ
purlGTN:F00176	FAQs	Importing and launching a GTN workflow	Galaxy FAQ
purlGTN:F00368	FAQs	Importing and Launching a WorkflowHub.eu Workflow	Galaxy FAQ
purlGTN:W00111	Workflow	Galaxy Introduction Peaks2Genes - Part 1	Introduction to Galaxy Analyses
purlGTN:W00148	Workflow	DIA_analysis_MSstats	Proteomics
purlGTN:W00149	Workflow	DIA_analysis_MSstats	Proteomics
purlGTN:W00088	Workflow	Genome Annotation with Prokka	Genome Annotation
purlGTN:W00112	Workflow	Galaxy Intro Short	Introduction to Galaxy Analyses
purlGTN:W00123	Workflow	Amplicon Tutorial	Microbiome
purlGTN:W00124	Workflow	WGS Part In "Analyses Of Metagenomics Data - The Global Picture"	Microbiome
purlGTN:W00008	Workflow	Intro to Genome Assembly	Assembly
purlGTN:W00221	Workflow	Classification LSVC	Statistics and machine learning
purlGTN:W00222	Workflow	Regression GradientBoosting	Statistics and machine learning
purlGTN:W00223	Workflow	Clustering in Machine Learning	Statistics and machine learning
purlGTN:W00244	Workflow	DEG Part - Ref Based RNA Seq - Transcriptomics - GTN	Transcriptomics
purlGTN:W00245	Workflow	QC + Mapping + Counting (single+paired) - Ref Based RNA Seq - Transcriptomics - GTN	Transcriptomics
purlGTN:W00246	Workflow	QC + Mapping + Counting - Ref Based RNA Seq - Transcriptomics - GTN - subworkflows	Transcriptomics
purlGTN:W00258	Workflow	Du Novo GTN Tutorial - Make Consensus Sequences	Variant Analysis
purlGTN:W00259	Workflow	Du Novo GTN Tutorial - Variant Calling	Variant Analysis
purlGTN:W00100	Workflow	Essential genes detection with Transposon insertion sequencing	Genome Annotation
purlGTN:W00068	Workflow	GTN - ChIP Seq - Formation Of Super Structures On Xi	Epigenetics
purlGTN:W00039	Workflow	Zauberkugel	Computational chemistry
purlGTN:W00038	Workflow	Data management in Medicinal Chemistry workflow	Computational chemistry
purlGTN:W00035	Workflow	GROMACS Training Workflow	Computational chemistry
purlGTN:W00031	Workflow	CTB Workflow	Computational chemistry
purlGTN:W00033	Workflow	Workflow constructed from history 'Hsp90-MDAnalysis'	Computational chemistry
purlGTN:W00034	Workflow	MD protein-ligand workflow (from PDB structure)	Computational chemistry
purlGTN:W00036	Workflow	MD NAMD	Computational chemistry
purlGTN:W00037	Workflow	NAMD MD From CHARMM GUI	Computational chemistry
purlGTN:W00032	Workflow	Virtual screening of the SARS-CoV-2 main protease with rDock and pose scoring	Computational chemistry
purlGTN:W00029	Workflow	Analysis using MDAnalysis	Computational chemistry
purlGTN:W00030	Workflow	Simple Analysis	Computational chemistry
purlGTN:W00178	Workflow	Sanger1 : From AB1 to aligned consensus and primers fasta + BLAST	Sequence analysis
purlGTN:W00179	Workflow	Training Sanger sequences CHD8	Sequence analysis
purlGTN:W00183	Workflow	NCBI Foreign Contamination Screen	Sequence analysis
purlGTN:W00275	Workflow	Quality and contamination control in bacterial isolate using Illumina MiSeq Data	Sequence analysis
purlGTN:W00322	Workflow	Primer design of a virus family (imported from uploaded file)	Sequence analysis
purlGTN:W00323	Workflow	Identification and Evolutionary Analysis of Transcription-Associated Proteins	Sequence analysis
purlGTN:W00184	Workflow	GTN - Sequence Analyses - Quality Control (imported from uploaded file)	Sequence analysis
purlGTN:W00180	Workflow	GTN - Sequence Analyses - Removal of human reads from SARS-CoV-2 sequencing data	Sequence analysis
purlGTN:W00181	Workflow	GTN - Sequence Analyses - Mapping - Jbrowse (imported from uploaded file)	Sequence analysis
purlGTN:W00182	Workflow	GTN - Sequence Analyses - Mapping (imported from uploaded file)	Sequence analysis
purlGTN:W00250	Workflow	QC report	Transcriptomics
purlGTN:W00251	Workflow	RNA Seq Reads To Counts	Transcriptomics
purlGTN:W00235	Workflow	De novo transcriptome reconstruction with RNA-Seq	Transcriptomics
purlGTN:W00239	Workflow	BY-COVID: Data Download	Transcriptomics
purlGTN:W00240	Workflow	mRNA-Seq BY-COVID Pipeline: Analysis	Transcriptomics
purlGTN:W00241	Workflow	mRNA-Seq BY-COVID Pipeline: Counts	Transcriptomics
purlGTN:W00248	Workflow	RNA Seq Counts To Genes	Transcriptomics
purlGTN:W00238	Workflow	GO Enrichment Workflow	Transcriptomics
purlGTN:W00249	Workflow	RNA Seq Genes To Pathways (imported from uploaded file)	Transcriptomics
purlGTN:W00243	Workflow	Workflow Constructed From History 'Heinz Workflow Trial Sep 11'	Transcriptomics
purlGTN:W00236	Workflow	GTN_differential_isoform_expression	Transcriptomics
purlGTN:W00326	Workflow	Visualization Of RNA-Seq Results With Volcano Plot	Transcriptomics
purlGTN:W00254	Workflow	Blockclust 1.1.0 Clustering	Transcriptomics
purlGTN:W00242	Workflow	Plant bulk RNA-Seq workflow	Transcriptomics
purlGTN:W00247	Workflow	RNA-RNA interactome data analysis - chira v1.4.3	Transcriptomics
purlGTN:W00237	Workflow	trinity NG	Transcriptomics
purlGTN:W00234	Workflow	Tutorial CLIPseq Explorer Demultiplexed PEAKachu eCLIP Hg38	Transcriptomics
purlGTN:W00255	Workflow	sRNA Seq Step 1: Read Pre Processing And Removal Of Artifacts (no Grooming)	Transcriptomics
purlGTN:W00256	Workflow	sRNA Seq Step 2: Salmon And DESeq2	Transcriptomics
purlGTN:W00252	Workflow	Heatmap2 Workflow	Transcriptomics
purlGTN:W00217	Workflow	papaa@0.1.9_PI3K_OG_model_tutorial	Statistics and machine learning
purlGTN:W00218	Workflow	Age Prediction DNA Methylation	Statistics and machine learning
purlGTN:W00219	Workflow	Age Prediction RNA-Seq	Statistics and machine learning
purlGTN:W00225	Workflow	gpu_jupytool	Statistics and machine learning
purlGTN:W00316	Workflow	Text-Mining Differences in Chinese Newspaper Articles	Statistics and machine learning
purlGTN:W00230	Workflow	Simtext training workflow	Statistics and machine learning
purlGTN:W00215	Workflow	Intro_To_FNN_v1_0_10_0	Statistics and machine learning
purlGTN:W00296	Workflow	Ludwig - Image recognition model - MNIST	Statistics and machine learning
purlGTN:W00214	Workflow	Intro_To_CNN_v1.0.11.0	Statistics and machine learning
purlGTN:W00226	Workflow	Intro_To_Deep_Learning	Statistics and machine learning
purlGTN:W00229	Workflow	ml_regression	Statistics and machine learning
purlGTN:W00216	Workflow	Intro_To_RNN_v1_0_10_0	Statistics and machine learning
purlGTN:W00224	Workflow	fruit_360	Statistics and machine learning
purlGTN:W00290	Workflow	Ludwig - Image recognition model - MNIST	Statistics and machine learning
purlGTN:W00228	Workflow	Machine Learning	Statistics and machine learning
purlGTN:W00220	Workflow	ml_classification	Statistics and machine learning
purlGTN:W00227	Workflow	Workflow Constructed From History 'IWTomics Workflow'	Statistics and machine learning
purlGTN:W00040	Workflow	MakeAFakeInput	Contributing to the Galaxy Training Material
purlGTN:W00041	Workflow	Retrieve climate data from Copernicus	Contributing to the Galaxy Training Material
purlGTN:W00273	Workflow	Circos for E. Coli	Visualisation
purlGTN:W00271	Workflow	Circos tutorial	Visualisation
purlGTN:W00272	Workflow	Circos: Nature workflow	Visualisation
purlGTN:W00119	Workflow	MSI Workflow: spatial distribution	Metabolomics
purlGTN:W00288	Workflow	End-to-end EI+ mass spectra prediction workflow using QCxMS	Metabolomics
purlGTN:W00117	Workflow	GC MS using XCMS	Metabolomics
purlGTN:W00118	Workflow	Workflow Constructed From History 'imported: testpourGCC'	Metabolomics
purlGTN:W00120	Workflow	MSI Finding Diff Analytes	Metabolomics
purlGTN:W00026	Workflow	GTN 'Pangeo 101 for everyone - Xarray'	Climate
purlGTN:W00022	Workflow	Analyse Argo data	Climate
purlGTN:W00027	Workflow	Pangeo Jupyter Notebook	Climate
purlGTN:W00028	Workflow	Sentinel5 volcanic data	Climate
purlGTN:W00025	Workflow	Ocean's variables 2.0	Climate
purlGTN:W00023	Workflow	Climate 101	Climate
purlGTN:W00024	Workflow	CLM-FATES_ ALP1 simulation (5 years)	Climate
purlGTN:W00063	Workflow	ATAC-seq GTM	Epigenetics
purlGTN:W00064	Workflow	CUT&RUN	Epigenetics
purlGTN:W00069	Workflow	Galaxy Workflow Galaxy Hi C	Epigenetics
purlGTN:W00065	Workflow	Identification Of The Binding Sites Of The Estrogen Receptor - Chip Seq	Epigenetics
purlGTN:W00066	Workflow	Identification Of The Binding Sites Of The Estrogen Receptor - Qc Mapping	Epigenetics
purlGTN:W00071	Workflow	Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)	Epigenetics
purlGTN:W00067	Workflow	Infinium Human Methylation BeadChip	Epigenetics
purlGTN:W00070	Workflow	Workflow Methylation Seq	Epigenetics
purlGTN:W00291	Workflow	Capturing mitoflashes	Imaging
purlGTN:W00103	Workflow	Workflow constructed from Tutorial 'Introduction to Image Analysis using Galaxy'	Imaging
TBA	Workflow	Segmentation_Values_Testing	Imaging
purlGTN:W00106	Workflow	CP_pipeline_IDR_training	Imaging
purlGTN:W00318	Workflow	GTN_Exemplar_002_TMA_workflow_Feb2025	Imaging
purlGTN:W00321	Workflow	2025_2D_spot_detection	Imaging
purlGTN:W00324	Workflow	Image prediction with BioImage.IO model (imported from uploaded file)	Imaging
purlGTN:W00105	Workflow	CP_object_tracking_example	Imaging
purlGTN:W00101	Workflow	analyze_screen	Imaging
purlGTN:W00102	Workflow	feature_extraction	Imaging
purlGTN:W00095	Workflow	CHROMEISTER chromosome comparison	Genome Annotation
purlGTN:W00096	Workflow	GECKO pairwise comparison	Genome Annotation
purlGTN:W00320	Workflow	Genome annotation with Braker3	Genome Annotation
purlGTN:W00283	Workflow	annotation_helixer	Genome Annotation
purlGTN:W00091	Workflow	Workflow constructed from history 'CRISPR tutorial Kenji'	Genome Annotation
purlGTN:W00094	Workflow	Comparative gene analysis	Genome Annotation
purlGTN:W00097	Workflow	Long non-coding RNAs (lncRNAs) annotation with FEELnc	Genome Annotation
purlGTN:W00086	Workflow	Genome annotation with Maker	Genome Annotation
purlGTN:W00085	Workflow	mrsa AMR gene detection	Genome Annotation
purlGTN:W00099	Workflow	Gene Cluster Product Similarity Search	Genome Annotation
purlGTN:W00089	Workflow	Apollo Load Test	Genome Annotation
purlGTN:W00092	Workflow	Funannotate	Genome Annotation
purlGTN:W00098	Workflow	RepeatMasker	Genome Annotation
purlGTN:W00087	Workflow	Genome annotation with Maker (short)	Genome Annotation
purlGTN:W00093	Workflow	Functional annotation	Genome Annotation
purlGTN:W00090	Workflow	Bacterial Genome Annotation	Genome Annotation
purlGTN:W00325	Workflow	NGS_tutorial	Introduction to Galaxy Analyses
purlGTN:W00115	Workflow	GTN Training: Galaxy 101 For Everyone	Introduction to Galaxy Analyses
purlGTN:W00108	Workflow	Find exons with the highest number of features	Introduction to Galaxy Analyses
purlGTN:W00113	Workflow	Galaxy Intro Strands 2	Introduction to Galaxy Analyses
purlGTN:W00114	Workflow	Galaxy Intro Strands	Introduction to Galaxy Analyses
purlGTN:W00107	Workflow	GTN Tutorial: Data manipulation Olympics - all steps and exercises	Introduction to Galaxy Analyses
purlGTN:W00109	Workflow	GTN Training: Galaxy 101 For Everyone	Introduction to Galaxy Analyses
TBA	Workflow	Data management in Medicinal Chemistry workflow	FAIR Data, Workflows, and Research
purlGTN:W00285	Workflow	Mitogenome-Assembly-VGP0	Assembly
TBA	Workflow	Metagenomics assembly tutorial workflow	Assembly
TBA	Workflow	workflow-generate-dataset-for-assembly-tutorial	Assembly
purlGTN:W00000	Workflow	Post-assembly workflow	Assembly
purlGTN:W00284	Workflow	Assembly-decontamination-VGP9	Assembly
purlGTN:W00019	Workflow	Genome Assembly of MRSA using Oxford Nanopore MinION (and Illumina data if available)	Assembly
purlGTN:W00004	Workflow	Chloroplast-genome-assembly-and-annotation	Assembly
purlGTN:W00021	Workflow	VGP assembly: training workflow	Assembly
purlGTN:W00018	Workflow	Genome Assembly of MRSA using Illumina MiSeq Data	Assembly
purlGTN:W00002	Workflow	assembly_with_preprocessing	Assembly
purlGTN:W00003	Workflow	assembly_with_preprocessing_and_sra_download	Assembly
purlGTN:W00006	Workflow	Ecoli Comparison	Assembly
purlGTN:W00001	Workflow	Genome Assembly Quality Control	Assembly
purlGTN:W00007	Workflow	Genome Assembly using PacBio data	Assembly
purlGTN:W00005	Workflow	Debruijn Graph	Assembly
purlGTN:W00020	Workflow	Unicycler training	Assembly
purlGTN:W00009	Workflow	Assembly polishing - upgraded	Assembly
purlGTN:W00010	Workflow	Assembly with Flye - upgraded	Assembly
purlGTN:W00011	Workflow	Assess genome quality - upgraded	Assembly
purlGTN:W00012	Workflow	Combined workflows for large genome assembly - upgraded	Assembly
purlGTN:W00013	Workflow	Data QC - upgraded	Assembly
purlGTN:W00014	Workflow	Racon polish with Illumina reads (R1 only), x2 - upgraded	Assembly
purlGTN:W00015	Workflow	Racon polish with long reads, x4 - upgraded	Assembly
purlGTN:W00016	Workflow	Trim and filter reads - fastp - upgraded	Assembly
purlGTN:W00017	Workflow	kmer counting - meryl - upgraded	Assembly
purlGTN:W00231	Workflow	Genetic Design (BASIC Assembly)	Synthetic Biology
purlGTN:W00232	Workflow	Pathway Analysis	Synthetic Biology
purlGTN:W00233	Workflow	RetroSynthesis	Synthetic Biology
purlGTN:W00171	Workflow	Proteomics: Peptide and Protein Quantification via stable istobe labeling	Proteomics
purlGTN:W00304	Workflow	GigaScience-IEDB-PepQuery-Neoantigen	Proteomics
purlGTN:W00164	Workflow	PeptideML	Proteomics
purlGTN:W00174	Workflow	GTN Proteogemics3 Novel Peptide Analysis	Proteomics
purlGTN:W00280	Workflow	WF4_Quantitation_Workflow	Proteomics
purlGTN:W00303	Workflow	GigaScience-RNAseq-Optitype-seq2HLA-to-IEDB-alleles	Proteomics
purlGTN:W00311	Workflow	Gigascience_Indels_SAV_non-reference_demonstration_STS26T-Gent_Workflow	Proteomics
purlGTN:W00159	Workflow	MaxQuant MSstatsTMT Training	Proteomics
purlGTN:W00156	Workflow	MS Imaging Loading Exploring Data	Proteomics
purlGTN:W00167	Workflow	Proteomics: Peptide and Protein ID using OpenMS	Proteomics
purlGTN:W00168	Workflow	Peptide And Protein ID Via OMS Using Two Search Engines	Proteomics
purlGTN:W00278	Workflow	WF2_Discovery-Workflow	Proteomics
purlGTN:W00298	Workflow	Gigascience_Fusions_demonstration_STS26T-Gent_Workflow	Proteomics
purlGTN:W00319	Workflow	MultiGSEA	Proteomics
purlGTN:W00301	Workflow	GigaScience_PepQuery2_demonstration_STS26T_neoantigen_candidates_workflow	Proteomics
purlGTN:W00300	Workflow	GigaScience_Database_merge_FragPipe_STS26T_demonstration	Proteomics
purlGTN:W00165	Workflow	Tails Triple Dimethyl OpenMS2.1	Proteomics
purlGTN:W00277	Workflow	WF1_Database_Generation_Workflow	Proteomics
purlGTN:W00175	Workflow	'Proteome Annotation'	Proteomics
purlGTN:W00176	Workflow	ProteoRE ProteomeAnnotation Tutorial (release 2.0)	Proteomics
purlGTN:W00166	Workflow	Copy of PeptideDataAnalysis (imported from uploaded file)	Proteomics
purlGTN:W00161	Workflow	metaQuantome_datacreation_workflow	Proteomics
purlGTN:W00153	Workflow	Proteomics: database handling	Proteomics
purlGTN:W00154	Workflow	Proteomics: database handling including mycoplasma	Proteomics
purlGTN:W00302	Workflow	GigaScience_Peptide_Annotation_demonstration_STS26T_neoantigen_candidates_workflow	Proteomics
purlGTN:W00157	Workflow	Proteomics: MaxQuant workflow	Proteomics
purlGTN:W00177	Workflow	Secreted Proteins Via GO Annotation And WoLF PSORT For shCTSB Paper	Proteomics
purlGTN:W00281	Workflow	WF5_Data_Interpretation_Worklow	Proteomics
purlGTN:W00279	Workflow	WF3_VERIFICATION_WORKFLOW	Proteomics
purlGTN:W00163	Workflow	metaquantome-taxonomy-workflow	Proteomics
purlGTN:W00158	Workflow	Proteomics: MaxQuant and MSstats LFQ workflow	Proteomics
purlGTN:W00152	Workflow	'Biomarkers4Paris' Workflow	Proteomics
purlGTN:W00151	Workflow	DIA_lib_OSW	Proteomics
purlGTN:W00173	Workflow	GTN Proteogemics2 Database Search	Proteomics
purlGTN:W00169	Workflow	Peptide And Protein ID Tutorial	Proteomics
purlGTN:W00170	Workflow	ProteinID SG PS Tutorial WF datasetCollection	Proteomics
purlGTN:W00155	Workflow	EncyclopeDIA-GTN	Proteomics
purlGTN:W00150	Workflow	DIA_Analysis_OSW	Proteomics
purlGTN:W00160	Workflow	Metaproteomics_GTN	Proteomics
purlGTN:W00172	Workflow	GTN Proteogenomics1 Database Creation	Proteomics
purlGTN:W00162	Workflow	metaquantome-function-worklow	Proteomics
purlGTN:W00080	Workflow	Tutorial workflow	Using Galaxy and Managing your Data
purlGTN:W00081	Workflow	Subworkflow	Using Galaxy and Managing your Data
purlGTN:W00077	Workflow	Intermine import/export	Using Galaxy and Managing your Data
purlGTN:W00082	Workflow	Select First N Lines	Using Galaxy and Managing your Data
purlGTN:W00083	Workflow	GTN Training: Workflow Reports - Galaxy 101 For Everyone	Using Galaxy and Managing your Data
purlGTN:W00084	Workflow	GTN Training: Workflow Reports	Using Galaxy and Managing your Data
purlGTN:W00078	Workflow	GTN_ENA_upload_workflow	Using Galaxy and Managing your Data
purlGTN:W00079	Workflow	vcf2lineage	Using Galaxy and Managing your Data
purlGTN:W00116	Workflow	Finding the Muon Stopping Site: pymuon-suite in Galaxy	Materials Science
purlGTN:W00073	Workflow	Mtb phylogeny	Evolution
purlGTN:W00072	Workflow	Tree Building (imported from uploaded file)	Evolution
purlGTN:W00074	Workflow	From BAMs to drug resistance prediction with TB-profiler	Evolution
purlGTN:W00075	Workflow	From Fastqs to VCFs and BAMs	Evolution
purlGTN:W00076	Workflow	From VCFs to SNP distance matrix	Evolution
TBA	Workflow	GTN Tutorial: Data manipulation Olympics - all steps and exercises	Foundations of Data Science
purlGTN:W00128	Workflow	Workflow 1: Preprocessing	Microbiome
purlGTN:W00129	Workflow	Workflow 2: Community Profile	Microbiome
purlGTN:W00130	Workflow	Workflow 3: Functional Information	Microbiome
purlGTN:W00131	Workflow	Workflow 3: Functional Information (quick)	Microbiome
purlGTN:W00127	Workflow	Main Metatranscriptomics Analysis	Microbiome
TBA	Workflow	WF4_Quantitation_Workflow	Microbiome
purlGTN:W00125	Workflow	Metagenomics assembly tutorial workflow	Microbiome
purlGTN:W00126	Workflow	workflow-generate-dataset-for-assembly-tutorial	Microbiome
TBA	Workflow	WF2_Discovery-Workflow	Microbiome
purlGTN:W00121	Workflow	Identification of the micro-organisms in a beer using Nanopore sequencing	Microbiome
purlGTN:W00289	Workflow	Workflow for Identifying MF from ITS2 sequencing using LotuS2 - tutorial example run'	Microbiome
TBA	Workflow	WF1_Database_Generation_Workflow	Microbiome
purlGTN:W00132	Workflow	Training: 16S rRNA Sequencing With Mothur: Main Tutorial	Microbiome
purlGTN:W00122	Workflow	Building an amplicon sequence variant (ASV) table from 16S data using DADA2	Microbiome
purlGTN:W00146	Workflow	Copy Of GTN Training - Antibiotic Resistance Detection	Microbiome
purlGTN:W00276	Workflow	Calculating diversity from microbiome taxonomic data	Microbiome
purlGTN:W00140	Workflow	Training: 16S rRNA Analysis with Nanopore Sequencing Reads	Microbiome
TBA	Workflow	WF5_Data_Interpretation_Worklow	Microbiome
TBA	Workflow	WF3_VERIFICATION_WORKFLOW	Microbiome
purlGTN:W00297	Workflow	Query a metaplasmidome database to identify and annotate plasmids in metagenomes	Microbiome
purlGTN:W00133	Workflow	Workflow 1: Quality Control [Galaxy Training: 16S Microbial Analysis With Mothur]	Microbiome
purlGTN:W00134	Workflow	Workflow 2: Data Cleaning And Chimera Removal [Galaxy Training: 16S Microbial Analysis With Mothur]	Microbiome
purlGTN:W00135	Workflow	Workflow 3: Classification [Galaxy Training: 16S Microbial Analysis With Mothur]	Microbiome
purlGTN:W00136	Workflow	Workflow 4: Mock OTU Clustering [Galaxy Training: 16S Microbial Analysis With Mothur]	Microbiome
purlGTN:W00137	Workflow	Workflow 5: OTU Clustering [Galaxy Training: 16S Microbial Analysis With Mothur]	Microbiome
purlGTN:W00138	Workflow	Workflow 6: Alpha Diversity [Galaxy Training: 16S Microbial Analysis With Mothur]	Microbiome
purlGTN:W00139	Workflow	Workflow7: Beta Diversity [Galaxy Training: 16S Microbial Analysis With Mothur]	Microbiome
purlGTN:W00147	Workflow	Taxonomic Profiling and Visualization of Metagenomic Data	Microbiome
purlGTN:W00141	Workflow	Allele-based Pathogen Identification	Microbiome
purlGTN:W00142	Workflow	Gene-based Pathogen Identification	Microbiome
purlGTN:W00143	Workflow	Nanopore Preprocessing	Microbiome
purlGTN:W00144	Workflow	Pathogen Detection PathoGFAIR Samples Aggregation and Visualisation	Microbiome
purlGTN:W00145	Workflow	Taxonomy Profiling and Visualization with Krona	Microbiome
purlGTN:W00317	Workflow	Workflow to detect SNV from Illumina sequenced baculovirus isolates	Variant Analysis
purlGTN:W00264	Workflow	Calling variants in non-diploid systems	Variant Analysis
purlGTN:W00266	Workflow	Simple COVID-19 - PE Variation	Variant Analysis
purlGTN:W00267	Workflow	Somatic-Variant-Discovery-from-WES-Data-Using-Control-FREEC	Variant Analysis
purlGTN:W00269	Workflow	TB Variant Analysis v1.0	Variant Analysis
purlGTN:W00257	Workflow	diploid	Variant Analysis
purlGTN:W00270	Workflow	Trio Analysis Tutorial	Variant Analysis
purlGTN:W00268	Workflow	Identification of somatic and germline variants from tumor and normal sample pairs tutorial	Variant Analysis
purlGTN:W00262	Workflow	Mapping And Molecular Identification Of Phenotype Causing Mutations	Variant Analysis
purlGTN:W00265	Workflow	pox-virus-tiled-amplicon-ref-masking	Variant Analysis
purlGTN:W00260	Workflow	Exome Seq Training Pre-Mapped W Cached Ref	Variant Analysis
purlGTN:W00261	Workflow	Exome Seq Training Full W Cached Ref	Variant Analysis
purlGTN:W00263	Workflow	Microbial Variant Calling	Variant Analysis
purlGTN:W00327	Workflow	Generating a single cell matrix using Alevin	Single Cell
purlGTN:W00328	Workflow	LOCKED \| Generating a single cell matrix using Alevin	Single Cell
purlGTN:W00199	Workflow	AnnData object to Monocle input files	Single Cell
purlGTN:W00200	Workflow	Monocle3 workflow	Single Cell
purlGTN:W00201	Workflow	Trajectory analysis using Monocle3 - full tutorial workflow	Single Cell
purlGTN:W00274	Workflow	Workflow - Standard processing of 10X single cell ATAC-seq data with SnapATAC2	Single Cell
purlGTN:W00314	Workflow	Understanding Barcodes	Single Cell
purlGTN:W00191	Workflow	Scanpy Parameter Iterator workflow full (imported from URL)	Single Cell
purlGTN:W00292	Workflow	Seurat Filter, Plot and Exlore tutorial	Single Cell
purlGTN:W00313	Workflow	Differential gene expression for single-cell data using pseudo-bulk counts with edgeR	Single Cell
purlGTN:W00213	Workflow	Single-cell QC with scater	Single Cell
purlGTN:W00208	Workflow	CelSeq2: Multi Batch (mm10)	Single Cell
purlGTN:W00209	Workflow	CelSeq2: Single Batch (mm10)	Single Cell
purlGTN:W00212	Workflow	Clustering 3k PBMC with Scanpy	Single Cell
purlGTN:W00293	Workflow	CS3_Filter, Plot and Explore Single-cell RNA-seq Data	Single Cell
purlGTN:W00197	Workflow	Filter, Plot and Explore Single-cell RNA-seq Data updated	Single Cell
purlGTN:W00331	Workflow	Filter plot and explore single-cell RNA-seq data with Scanpy (imported from uploaded file)	Single Cell
purlGTN:W00202	Workflow	Inferring Trajectories with Scanpy Tutorial Workflow	Single Cell
purlGTN:W00307	Workflow	Music Stage 1 - Create pseudobulk and actual proportions	Single Cell
purlGTN:W00308	Workflow	Music Stage 2 - Inferring cellular proportions	Single Cell
purlGTN:W00309	Workflow	Music Stage 3 - Preprocess Visualisations	Single Cell
purlGTN:W00310	Workflow	Music Stage 4 - Compute metrics	Single Cell
purlGTN:W00189	Workflow	MuSiC-Deconvolution: Data generation \| bulk \| ESet	Single Cell
purlGTN:W00185	Workflow	EBI SCXA to AnnData (Scanpy) or Seurat Object	Single Cell
purlGTN:W00186	Workflow	MuSiC: Deconvolution	Single Cell
purlGTN:W00312	Workflow	Music: Pre-grouping cell types	Single Cell
purlGTN:W00190	Workflow	MuSiC-Deconvolution: Compare	Single Cell
purlGTN:W00329	Workflow	Combining datasets after pre-processing	Single Cell
purlGTN:W00330	Workflow	LOCKED \| Combining single cell datasets after pre-processing	Single Cell
purlGTN:W00192	Workflow	scATAC-seq Count Matrix Filtering	Single Cell
purlGTN:W00193	Workflow	scATAC-seq FASTQ to Count Matrix	Single Cell
purlGTN:W00206	Workflow	NCBI to Anndata	Single Cell
purlGTN:W00198	Workflow	Cell Cycle Regression Workflow	Single Cell
purlGTN:W00207	Workflow	scRNA Plant Analysis	Single Cell
purlGTN:W00294	Workflow	scRNA Plant Analysis	Single Cell
purlGTN:W00187	Workflow	MuSiC-Deconvolution: Data generation \| sc \| matrix + ESet	Single Cell
purlGTN:W00188	Workflow	MuSiC-Deconvolution: Data generation \| sc \| metadata	Single Cell
purlGTN:W00287	Workflow	GO Enrichment Workflow	Single Cell
purlGTN:W00315	Workflow	Multisample Batch Correction with SnapATAC2 and Harmony	Single Cell
purlGTN:W00295	Workflow	RaceID Workflow	Single Cell
purlGTN:W00210	Workflow	GTN - Preprocessing of 10X scRNA-seq data	Single Cell
purlGTN:W00203	Workflow	AnnData to Cell Data Set (CDS) conversion	Single Cell
purlGTN:W00204	Workflow	AnnData to Seurat conversion	Single Cell
purlGTN:W00205	Workflow	AnnData to SingleCellExperiment (SCE) conversion	Single Cell
purlGTN:W00305	Workflow	Clustering 3k PBMCs with Seurat - Workflow	Single Cell
purlGTN:W00306	Workflow	Cluster 3k PBMCs with Seurat - Workflow - SCTransform Version	Single Cell
purlGTN:W00042	Workflow	Workflow constructed from history 'Tuto Obitools'	Ecology
purlGTN:W00282	Workflow	Marine Omics identifying biosynthetic gene clusters	Ecology
purlGTN:W00049	Workflow	Genetic Map Rad Seq Workflow	Ecology
purlGTN:W00047	Workflow	de novo Rad Seq	Ecology
purlGTN:W00050	Workflow	NDVI with OpenEO	Ecology
purlGTN:W00051	Workflow	NDVI with OpenEO	Ecology
purlGTN:W00045	Workflow	Workflow 'Biodiversity data exploration tuto'	Ecology
purlGTN:W00043	Workflow	Compute and analyze biodiversity metrics with PAMPA toolsuite	Ecology
purlGTN:W00044	Workflow	Checking expected species and contamination in bacterial isolate	Ecology
purlGTN:W00052	Workflow	Marine Omics visualisation	Ecology
purlGTN:W00060	Workflow	Sentinel 2 example	Ecology
purlGTN:W00061	Workflow	Species Distribution Modeling With Wallace From GBIF - Training Material	Ecology
purlGTN:W00053	Workflow	preparing genomic data for phylogeny recostruction (GTN)	Ecology
purlGTN:W00062	Workflow	Xarray_Map_Plotting_Workflow	Ecology
purlGTN:W00056	Workflow	Abundance Index "stacked" Visualization Creation	Ecology
purlGTN:W00057	Workflow	Phenology "stacked" Visualization Creation	Ecology
purlGTN:W00058	Workflow	Tutorial regionalGAM Complete Multispecies	Ecology
purlGTN:W00059	Workflow	Regional GAM Workflow	Ecology
purlGTN:W00286	Workflow	Ecoregionalization workflow	Ecology
purlGTN:W00046	Workflow	Champs blocs indicators	Ecology
purlGTN:W00054	Workflow	Workflow Constructed From History 'STACKS RAD: Population Genomics With Reference Genome'	Ecology
purlGTN:W00055	Workflow	Ref Based Rad Seq	Ecology
purlGTN:W00048	Workflow	GBIF data Quality check and filtering workflow Feb-2020	Ecology