Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelena Rasche avatar Helena Rasche

Contributors

This material was contributed to by:

Assunta DeSanto avatar Assunta DeSantoorcid logoNate Coraor avatar Nate Coraororcid logoJohn Davis avatar John Davisorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoAlex Ostrovsky avatar Alex OstrovskyGildas Le Corguillé avatar Gildas Le Corguilléorcid logoBjörn Grüning avatar Björn Grüningorcid logoHelena Rasche avatar Helena Rascheorcid logoAnthony Bretaudeau avatar Anthony BretaudeauAysam Guerler avatar Aysam Guerlerorcid logoBérénice Batut avatar Bérénice Batutorcid logoWendi Bacon avatar Wendi BaconRoss Lazarus avatar Ross Lazarusorcid logoPaul Zierep avatar Paul ZierepSimon Bray avatar Simon BrayDave B. avatar Dave B.Stéphanie Legras avatar Stéphanie LegrasClare Sloggett avatar Clare Sloggettorcid logoGianmauro Cuccuru avatar Gianmauro Cuccuruorcid logoYvan Le Bras avatar Yvan Le BrasLoraine Guéguen avatar Loraine Guéguenorcid logoMartin Čech avatar Martin Čechorcid logoClemens Blank avatar Clemens Blankorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoJohn Chilton avatar John ChiltonYouri Hoogstrate avatar Youri HoogstrateNitesh Turaga avatar Nitesh Turagaorcid logoJohan Gustafsson avatar Johan GustafssonCyril Monjeaud avatar Cyril MonjeaudMarie Josse avatar Marie JosseDannon Baker avatar Dannon BakerLain Pavot avatar Lain PavotErik Schill avatar Erik SchillMatthias Bernt avatar Matthias BerntEstelle Ancelet avatar Estelle AnceletHervé Ménager avatar Hervé Ménagerorcid logoCameron Hyde avatar Cameron Hyde

Funding

These individuals or organisations provided funding support for the development of this resource