Plants
Set of tutorials from various topics that use plant datasets for analysis
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Material
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Assembly
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
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Chloroplast genome assembly | |||||
ERGA post-assembly QC | |||||
Large genome assembly and polishing |
FAIR Data, Workflows, and Research
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
DataPLANT ARCs |
Genome Annotation
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
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From small to large-scale genome comparison |
Microbiome
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
16S Microbial analysis with Nanopore data |
Sequence analysis
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
NCBI BLAST+ against the MAdLand |
Single Cell
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
Analysis of plant scRNA-Seq Data with Scanpy |
Transcriptomics
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
Whole transcriptome analysis of Arabidopsis thaliana |
Editorial Board
This material is reviewed by our Editorial Board:
Deepti Varshney Saskia HiltemannContributors
This material was contributed to by:
Björn Grüning Pavankumar Videm Delphine Lariviere Dominik Brilhaus Helena Rasche Tom Brown Cristóbal Gallardo Fabian Recktenwald Martin Kuhl Cristina Martins Rodrigues Beatriz Serrano-Solano Sabrina Zander Kevin Frey Anna Syme Mehmet Tekman Stella Eggels Saskia Hiltemann Deepti Varshney Esteban Perez-WohlfeilFunding
These individuals or organisations provided funding support for the development of this resource