Metabolomics

Training material to analyse Mass spectrometry data in Galaxy: Metabolomics (LCMS, FIAMS, GCMS, NMR) and imaging.

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Metabolomics
Mass spectrometry imaging: Examining the spatial distribution of analytes
Mass spectrometry imaging: Finding differential analytes
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
Mass spectrometry: LC-MS analysis
Mass spectrometry: LC-MS data processing
Mass spectrometry: LC-MS preprocessing with XCMS
Predicting EI+ mass spectra with QCxMS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le CorguilléMélanie Petera avatar Mélanie Peteraorcid logoMelanie Föll avatar Melanie Föll

Contributors

This material was contributed to by:

Cécile Canlet avatar Cécile Canletorcid logoBérénice Batut avatar Bérénice BatutGildas Le Corguillé avatar Gildas Le Corguilléorcid logoMatej Troják avatar Matej TrojákJean-François Martin avatar Jean-François MartinSimon Bray avatar Simon BrayWorkflow4Metabolomics core team avatar Workflow4Metabolomics core teamorcid logoHelena Rasche avatar Helena Rascheorcid logoBjörn Grüning avatar Björn Grüningorcid logoMaxim Skoryk avatar Maxim Skorykorcid logoHelge Hecht avatar Helge Hechtorcid logoMelanie Föll avatar Melanie Föllorcid logoSaskia Hiltemann avatar Saskia HiltemannMaren Stillger avatar Maren StillgerYann Guitton avatar Yann GuittonMélanie Petera avatar Mélanie Peteraorcid logoJulia Jakiela avatar Julia JakielaJulien Saint-Vanne avatar Julien Saint-Vanne

Funding

These individuals or organisations provided funding support for the development of this resource

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ELIXIR Europe
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UFR