Metabolomics

Training material to analyse Mass spectrometry data in Galaxy: Metabolomics (LCMS, FIAMS, GCMS, NMR) and imaging.

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.
Lesson Slides Hands-on Recordings Input dataset Workflows
Introduction to Metabolomics
Mass spectrometry imaging: Examining the spatial distribution of analytes
Mass spectrometry imaging: Finding differential analytes
Mass spectrometry: GC-MS analysis with the metaMS package
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)
Mass spectrometry: LC-MS analysis
Mass spectrometry: LC-MS data processing
Mass spectrometry: LC-MS preprocessing with XCMS
Molecular formula assignment and mass recalibration with MFAssignR package
Predicting EI+ mass spectra with QCxMS

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le CorguilléMélanie Petera avatar Mélanie Peteraorcid logoMelanie Föll avatar Melanie Föll

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Contributors

This material was contributed to by:

Cécile Canlet avatar Cécile CanletSimon Bray avatar Simon Brayorcid logoCristóbal Gallardo avatar Cristóbal Gallardoorcid logoBérénice Batut avatar Bérénice Batutorcid logoJulia Jakiela avatar Julia JakielaMélanie Petera avatar Mélanie Peteraorcid logoMaxim Skoryk avatar Maxim Skorykorcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoKristina Gomoryova avatar Kristina GomoryovaJean-François Martin avatar Jean-François Martinorcid logoHelge Hecht avatar Helge Hechtorcid logoMatej Troják avatar Matej Trojákorcid logoBjörn Grüning avatar Björn GrüningMaren Stillger avatar Maren StillgerGildas Le Corguillé avatar Gildas Le Corguilléorcid logoMelanie Föll avatar Melanie Föllorcid logoHelena Rasche avatar Helena RascheJulien Saint-Vanne avatar Julien Saint-Vanneorcid logoYann Guitton avatar Yann GuittonSimeon Schum avatar Simeon SchumWorkflow4Metabolomics core team avatar Workflow4Metabolomics core team

Funding

These individuals or organisations provided funding support for the development of this resource

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MetaboHUB
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UFR
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ELIXIR Europe
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RFMF