Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Anthony Bretaudeau

Contributors

This material was contributed to by:

Deepti Varshney

Laura Leroi

Gildas Le Corguillé

Guillaume Gautreau

Erwan Corre

Valentin Loux

Felicitas Kindel

Jonathan Kreplak

Björn Grüning

Romane LIBOUBAN

Teresa Müller

Maria Doyle

Simon Bray

Delphine Lariviere

Nathan Dunn

Simon Gladman

Miaomiao Zhou

Anna Syme

Twishi Gulati

Niall Beard

Anthony Bretaudeau

Saskia Hiltemann

Bérénice Batut

Stéphanie Robin

Hélène Chiapello

Bazante Sanders

Paul Zierep

Anton Nekrutenko

Alexandre Cormier

Esteban Perez-Wohlfeil

Kenji Fujihara

Helena Rasche

Cristóbal Gallardo

William Durand

Torsten Seemann

Jasper Ouwerkerk

Ekaterina Polkh

Nicola Soranzo

Anika Erxleben

Mateo Boudet

Funding

These individuals or organisations provided funding support for the development of this resource

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

ABRomics

IFB

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ELIXIR Europe

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