Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Simon Gladman

Anthony Bretaudeau

Contributors

This material was contributed to by:

Anton Nekrutenko

Helena Rasche

Jonathan Kreplak

Saskia Hiltemann

William Durand

Deepti Varshney

Bazante Sanders

Simon Bray

Mateo Boudet

Alexandre Cormier

Bérénice Batut

Nathan Dunn

Felicitas Kindel

Romane LIBOUBAN

Kenji Fujihara

Niall Beard

Anna Syme

Torsten Seemann

Miaomiao Zhou

Twishi Gulati

Erwan Corre

Björn Grüning

Delphine Lariviere

Gildas Le Corguillé

Anika Erxleben

Teresa Müller

Cristóbal Gallardo

Nicola Soranzo

Simon Gladman

Jasper Ouwerkerk

Esteban Perez-Wohlfeil

Maria Doyle

Stéphanie Robin

Paul Zierep

Laura Leroi

Ekaterina Polkh

Anthony Bretaudeau

Funding

These individuals or organisations provided funding support for the development of this resource

ELIXIR Europe

IFB

ABRomics

Avans

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.