Genome Annotation

Genome annotation is a multi-level process that includes prediction of protein-coding genes, as well as other functional genome units such as structural RNAs, tRNAs, small RNAs, pseudogenes, control regions, direct and inverted repeats, insertion sequences, transposons and other mobile elements.

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Requirements

Before diving into this topic, we recommend you to have a look at:

• Introduction to Galaxy Analyses

Material

Introduction

Start here if you are new to genome annotation in Galaxy.

Prokaryotes

Annotation of prokaryotic genomes.

Eukaryotes

Annotation of eukaryotic genomes.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Simon Gladman

Anthony Bretaudeau

Contributors

This material was contributed to by:

Saskia Hiltemann

Maria Doyle

Anika Erxleben

Cristóbal Gallardo

Delphine Lariviere

Simon Bray

Miaomiao Zhou

Nicola Soranzo

Erwan Corre

Mateo Boudet

Romane LIBOUBAN

Jonathan Kreplak

Helena Rasche

Anthony Bretaudeau

Kenji Fujihara

Laura Leroi

Nathan Dunn

Niall Beard

Ekaterina Polkh

Stéphanie Robin

Bazante Sanders

Teresa Müller

Paul Zierep

William Durand

Bérénice Batut

Torsten Seemann

Anton Nekrutenko

Twishi Gulati

Esteban Perez-Wohlfeil

Deepti Varshney

Jasper Ouwerkerk

Björn Grüning

Simon Gladman

Anna Syme

Alexandre Cormier

Gildas Le Corguillé

Felicitas Kindel

Funding

These individuals or organisations provided funding support for the development of this resource

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

Avans

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ABRomics

ELIXIR Europe

IFB